BAC Information

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BAC

Clone NameMSMg01-148F04
ChromosomeX (Build37)
Map Location 47,041,821 - 47,042,473
singlet/doubletsinglet
Overlap genenone
Upstream geneRbmx2, LOC665752, Gm595, EG637758, LOC100040295, Enox2, 1100001E04Rik, LOC100041697, Olfr1320
Downstream geneOlfr1321, Igsf1, Olfr1322, LOC100040344, Olfr1323, EG665816, Olfr1324, LOC100041788, 6720401G13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148F04.T7 (MSMg01no148_f04.b1)MSMg01-148F04.TJ (MSMg01no148_f04.g1)
ACCAG351352AG351353
length711709
length of high quality
(start - end)
653 (55 - 707)551 (74 - 624)
definitionCHROMAT_FILE: MSMg01no148_f04.b1 PHD_FILE: MSMg01no148_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:11 2005CHROMAT_FILE: MSMg01no148_f04.g1 PHD_FILE: MSMg01no148_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATAATTTGCGGCGCTAAACGACTCCTATAGTTTCAGAATCCGCGGAAT
TCACAACAATGATATCTAAATTGTGAGATGCAGCCTCGGAGATGAGATTG
GAGAAGGCAGCAGTAAAGCCATGGAAAGCATTGTGTCCCAGGTTAAAGAG
CCTGTGTTTCTGTCTACATAAGTGTCAAGTGCCTACTGTGTCTGGGCAAT
ATGCTAAGTACAACTACAAATGACTCTCTGTGTCTGTCTTTAAAGAGTTT
ACCATCTCATGGGAAGATAGGATGTATACACAAAAGTTTTCAGAATAGTA
ATGTTCCACATTAAATAGAAGAATAAAGTCCTTCTCTGGAAAAAGGAGTA
ACATACAAAAAATCCTAAAGGCTTCTAAGAGAAGGTGAAGCTATTTGCCT
TTTTCATTGTTAATATGTCCCGCTAAGAGAGTTTTGGGCCATTCTACTAA
GTAGTTTAACATTAATTAATTCCTCTTTTAATGTAAGGTAAATAGGAACC
CTGGAGTCTCACTTTGATACTCTATGGGTAGTTCTTTCAAGATCTACATA
GTCTGCAATGTTAAGACATTAAGTGTTGAACACTTTGACTATGGCTATAA
AAAGATAATATCTTTGAGCTTGGAAACTGTCTACATTGTTCATTATTCAC
ATAGCACAATTCATGGATAATATTAGGCTTTCAATAAATGTTTTGATTGA
ACAAATGAATN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTAAGAAAGGCACATATGAGCTCATAG
AGATTTAAGAAACAAGCACAGAGCCTCCATGGGTCTACCCCATGCCCTCT
ACATATACAGCATGGCTTGTTTGTTTTTATTGGGTCTCTTAACACTTTTT
GTGGAGAGCTGTGAGCAATTGCCATCAGGAGCCTCCACTGTGCCTAACTG
GTAAACAAGTAATGTGCGCAGGTGCAAGAGTAAATTCGTGCCAAGTCACT
GCCCATCCTGGGGCGTAGTAGTGGGGTGATGAGTGAGCAGCTAATCAGGA
GCTGACACGTCACATGGAGGGGTATATAAGCAGCATCATTTTCCTTGTTC
GGGGTTGTTCTTCTTTTGCCTCTGCAATCAATGCTCTCCCAATAAATGTG
TGCAGAAGGATCCTGTTGCAGCGTCGTTCTTCCTGGCCAGTTGAGCGCGT
GCAAGAACTTTTGGCTGCTTTTGGTATGTTTTTTCTCTTGTTGGGTTGCC
ACATCCAAGTCCAATATAATAGGGTTTACTTAATCTTATTGTGTTTTATT
TTTTCATGTTTGGTTGCTTTCTCTAAGAAGCCTGTTGTTTTTTAATGAGA
GACAGAAAGGGAGTGGATCCTGAGGGAAGGCGAGGAGGAACTGATAAAAG
CAGCACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_f04.b1 MSMg01no148_f04.b1 CHROMAT_FILE:
MSMg01no148_f04.b1 PHD_FILE: MSMg01no148_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:11 2005
         (653 letters)



>mm_chrX_47041621_47042673
          Length = 1053

 Score = 1226 bits (634), Expect = 0.0
 Identities = 649/654 (99%), Gaps = 2/654 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacaatgatatc-taaattgtgagatgcagcctcggagatgagattggagaaggcagcag 59
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aacaatgatataataaattgtgagatgcagcctcggagatgagattggagaaggcagcag 794

                                                                       
Query: 60  taaagccatggaaagcattgtgtcccaggttaaagagcctgtgtttctgtctacataagt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 taaagccatggaaagcattgtgtcccaggttaaagagcctgtgtttctgtctacataagt 734

                                                                       
Query: 120 gtcaagtgcctactgtgtctgggcaatatgctaagtacaactacaaatgactctctgtgt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gtcaagtgcctactgtgtctgggcaatatgctaagtacaactacaaatgactctctgtgt 674

                                                                       
Query: 180 ctgtctttaaagagtttaccatctcatgggaagataggatgtatacacaaaagttttcag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ctgtctttaaagagtttaccatctcatgggaagataggatgtatacacaaaagttttcag 614

                                                                       
Query: 240 aatagtaatgttccacattaaatagaagaataaagtccttctctggaaaaaggagtaaca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aatagtaatgttccacattaaatagaagaataaagtccttctctggaaaaaggagtaaca 554

                                                                       
Query: 300 tacaaaaaatcctaaaggcttctaagagaaggtgaagctatttgcctttttcattgttaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tacaaaaaatcctaaaggcttctaagagaaggtgaagctatttgcctttttcattgttaa 494

                                                                       
Query: 360 tatgtcccgctaagagagttttgggccattctactaagtagtttaacattaattaattcc 419
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tatgtcccactaagagagttttgggccattctactaagtagtttaacattaattaattcc 434

                                                                       
Query: 420 tcttttaatgtaaggtaaataggaaccctggagtctcactttgatactctatgggtagtt 479
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttttttaatgtaaggtaaataggaaccctggagtctcactttgatactctatgggtagtt 374

                                                                       
Query: 480 ctttcaagatctacatagtctgcaatgttaagacattaagtgttgaacactttgactatg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctttcaagatctacatagtctgcaatgttaagacattaagtgttgaacactttgactatg 314

                                                                       
Query: 540 gctataaaaagataatatctttgagcttggaaactgtctacattgttcattattcacata 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gctataaaaagataatatctttgagcttggaaactgtctacattgttcattattcacata 254

                                                                 
Query: 600 gcacaattcatggataatattaggctttcaataaatgttttgattgaacaaatg 653
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 253 gcacaattcatggataatattaggctttcaataaatgttttgattgaa-aaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)