Query= MSMg01no148_k08.b1 MSMg01no148_k08.b1 CHROMAT_FILE:
MSMg01no148_k08.b1 PHD_FILE: MSMg01no148_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:36 2005
(674 letters)
>mm_chrX_84434803_84435877
Length = 1075
Score = 1243 bits (643), Expect = 0.0
Identities = 664/671 (98%), Gaps = 1/671 (0%)
Strand = Plus / Minus
Query: 5 gaattccatctgatgtgcatgtaacagcagaaagagtgaatcacagttctaggagaagtt 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 gaattccatctgatgtgtatgtaacagcagaaagagtgaatcacagttctaggagaagtt 816
Query: 65 ccaaaatgaataaaacataaacatcatccttgacaaattcacaaggctgaaataaatata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaaaatgaataaaacataaacatcatccttgacaaattcacaaggctgaaataaatata 756
Query: 125 tgccatactaagctcctgaggaaataaataaatatatgccatactaagctcccgaggaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tgccatactaagctcctgaggaaataaataaatatatgccatactaagctcccgaggaaa 696
Query: 185 ggg-aaaaaaaaatgtgagaagaaagccattttcagacacacagaaccagagtagttgac 243
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 695 gggaaaaaaaaaatgtgagaagaaagccattttccgacacacagaaccagagtagttgac 636
Query: 244 aaacatttgaattttaagtgagtttttatttgccaacaaacataattctcctatacaaat 303
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aaacatttgaaatttaagtgagtttttatttgccaacaaacataattctcctatacaaat 576
Query: 304 gatcattttctaatcatatatgagcagactgaccaaaacacaagtcatctgcaaatactc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gatcattttctaatcatatatgagcagactgaccaaaacacaagtcatctgcaaatactc 516
Query: 364 agattcagccacacgctcttagtacaaatatgtactagtttgtatgtccatggtttctat 423
|||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 agattcagtcagatgctcttagtacaaatatgtactagtttgtatgtccatggtttctat 456
Query: 424 aaaattaaacatcaattgtaaataatttgcaaagcatagcttcaaatttagaattgatta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aaaattaaacatcaattgtaaataatttgcaaagcatagcttcaaatttagaattgatta 396
Query: 484 ttgtttacctttttgttgtacataaaaatacatttataaaagacctacttctttttccct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttgtttacctttttgttgtacataaaaatacatttataaaagacctacttctttttccct 336
Query: 544 aagttagtgttttctttaatgaaaaccctttgtaatttgattttttattaagtatctaag 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aagttagtgttttctttaatgaaaaccctttgtaatttgattttttattaagtatctaag 276
Query: 604 tattaagaatctaaattttattaaggatctgaattttcatctatttgattataataattt 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tattaagaatctaaattttattaaggatctgaattttcatctatttgattataataattt 216
Query: 664 tgatataaaac 674
|||||||||||
Sbjct: 215 tgatataaaac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1075
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1065
Effective search space: 707160
Effective search space used: 707160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_k08.g1 MSMg01no148_k08.g1 CHROMAT_FILE:
MSMg01no148_k08.g1 PHD_FILE: MSMg01no148_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:37 2005
(619 letters)
>mm_chrX_84295635_84296653
Length = 1019
Score = 1166 bits (603), Expect = 0.0
Identities = 615/619 (99%)
Strand = Plus / Plus
Query: 1 actgtaagtcacattgatctgcagtttagtaataaaacatcttgggactaattcaactcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtaagtcacattgatctgcagtttagtaataaaacatcttgggactaattcaactcc 260
Query: 61 tgtgttctgaagtccaagaatctgacatgcaaagaggcccaatgctttgacaatgaaaat 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgttctgaagtccaagaatctgatatgcaaagaggcccaatgctttgacaatgaaaat 320
Query: 121 aaaacaatctcaaagtagaatttcagcagatcctttccactcaacactttttttatgtgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaacaatctcaaagtagaatttcagcagatcctttccactcaacactttttttatgtgc 380
Query: 181 cctttgaaaagtctgtcaggcagtctcccctcaaggtgtgtgcaatctgctaaacagtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctttgaaaagtctgtcaggcagtctcccctcaaggtgtgtgcaatctgctaaacagtga 440
Query: 241 aaacttgcaattaaatcatcacaacacagagcagcgagctgttgcagtgcaatctaaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacttgcaattaaatcatcacaacacagagcagcgagctgttgcagtgcaatctaaatc 500
Query: 301 taaaattgtcacatgttggtgttatgacggatatcagtttgaaacacctctcttctgatt 360
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 taaaattgtcacatgttggtgttatgacggatatcagtttgaaacatttctcttctgatt 560
Query: 361 tatttttctttggtaaaagtgaatcaaagtttccagatagcacaacagttaagcagctga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatttttctttggtaaaagtgaatcaaagtttccagatagcacaacagttaagcagctga 620
Query: 421 tctgacccaagagcaaaaagcctgtgagcaggaggtaatcactaaggttaggatgaatct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctgacccaagagcaaaaagcctgtgagcaggaggtaatcactaaggttaggatgaatct 680
Query: 481 caatttcccagtattttgagtcttacaaaattcatttttgcaaatgaagaatgttcactc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caatttcccagtattttgagtcttacaaaattcatttttgcaaatgaagaatgttcactc 740
Query: 541 actggcatgttatttgaatgttttttggcacattatgatgcttaatgcatatcagcgtag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actggcatgttatttgaatgttttttggcacattatgatgcttaatgcatatcagcgtag 800
Query: 601 tcgaaatgaattgacaaat 619
| |||||||||||||||||
Sbjct: 801 ttgaaatgaattgacaaat 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
