BAC Information

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BAC

Clone NameMSMg01-149N05
ChromosomeX (Build37)
Map Location 47,434,248 - 47,434,543
singlet/doubletsinglet
Overlap genenone
Upstream geneEnox2, 1100001E04Rik, LOC100041697, Olfr1320, Olfr1321, Igsf1, Olfr1322, LOC100040344, Olfr1323
Downstream geneEG665816, Olfr1324, LOC100041788, 6720401G13Rik, 2610018G03Rik, LOC100040422, Rap2c, LOC385355
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149N05.T7 (MSMg01no149_n05.b1)MSMg01-149N05.TJ (MSMg01no149_n05.g1)
ACCAG352438AG352439
length699691
length of high quality
(start - end)
524 (76 - 599)296 (99 - 394)
definitionCHROMAT_FILE: MSMg01no149_n05.b1 PHD_FILE: MSMg01no149_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:13 2005CHROMAT_FILE: MSMg01no149_n05.g1 PHD_FILE: MSMg01no149_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAAAAATAATGCATTAAAGATATGAAATGACTCATTCAAAAACT
AGTTTATGGATCTGAATAGGCATCTCAAAAGGAGAAAAAAAATTGCTTAA
GAAACTTCAAAACCATCTTCATCATTCTTAGCAATTATGGATTTACAAGT
AAAAACAATTTAAGATTTCATGTCACTCCAGTAAGAATGGTTATAATCAA
TAAAACATGTAAAAACAAATCAAGAATGGAGTCCTTCATTCCCTTTAGTG
GAGCTGCATACTGGTACAGCCACTCTGGAAATCAGCATGAAGAGTTATCA
AAGAGCCAAAAGTAAATCTGTCATATGACTCACTTGTACCATATCTTGGC
CTATGCTCCAAAGATTTGACTTTCTATTCCACAGCCATGTTCACTGATGT
GTTCCTAACAGCCAAAGAATAGAAACTACCTAAACATTATTCAATTGATG
AAAATGAAGATGTTATAAATATACACTGTAGAATAGGATTCAGCATAAAA
ATTGAGATCATTAAGCTTTCAAGTAAATGAGTGGAACTAGGAAATAATTT
ACTGAGCAATAAACCAGGAGAAAAACTAGACAAACACCATGTTTCTCTCT
TATCTGTGATTCCTAACTCCAAATCCTCAGATGTAATTATATAACCAGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAAATACTTTAATCATTAATGCACCGTAGG
AGATGAAAGTACCCTTTACTTGTGTTATAACATAACAGGATAAGCCCTGA
GATATAGCACACTACTTTTCCAGTGACAGGTTGAAAATTCACTTTTTCAG
TTTTTCTCATACATTGCTAACCCACTGAGAAAATAGAAATGAATGTTTAA
TTATTCACATTGGAGAAACAGCCTGGATACATTGGGAAGCATATATGAAG
CATTTGGTACAGACCATGCCTGACCTAAAGCTATACTACAGAATTCCCAT
CATATGAAGAGTTGGAAACATAGCTGAACTTATTTAGCTAAAAAAAAAAA
AAGACAAGAAACTAGAAGAAATTATGAATTGAACTTGAAGTGCTAAGAAA
ATGGAGCTACAGTTACTTCATCAAAGTTAGTTACCTGGTATTAAAAGTGC
TTCTTGAGCTTGCTAACAGGAGCCTGATATAGCTGTCTCTTGAGAGGCTC
TGCCAGTGCTTCCCAAATACGGAAGAGGATGCTCACAGCCATCCATGGGG
ACTGAGCACAGGGTCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGC
TGAAGGAGTTTGCACCCTTATAGGAGGAACACAATATGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_n05.g1 MSMg01no149_n05.g1 CHROMAT_FILE:
MSMg01no149_n05.g1 PHD_FILE: MSMg01no149_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:13 2005
         (296 letters)



>mm_chrX_47434048_47434743
          Length = 696

 Score =  549 bits (284), Expect = e-161
 Identities = 293/296 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggagatgaaagtaccctttacttgtgttataacataacaggataagccctgagatatagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggagatgaaagtaccctttacttgtgttataacataacaggataagccctgagatatagc 260

                                                                       
Query: 61  acactacttttccagtgacaggttgaaaattcactttttcagtttttctcatacattgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acactacttttccagtgacaggttgaaaattcactttttcagtttttctcatacattgct 320

                                                                       
Query: 121 aacccactgagaaaatagaaatgaatgtttaattattcacattggagaaacagcctggat 180
           |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 321 aacccactgagaaaatagaaatgaatgtttaattattcgcattggtgaaacagcctggat 380

                                                                       
Query: 181 acattgggaagcatatatgaagcatttggtacagaccatgcctgacctaaagctatacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acattgggaagcatatatgaagcatttggtacagaccatgcctgacctaaagctatacta 440

                                                                   
Query: 241 cagaattcccatcatatgaagagttggaaacatagctgaacttatttagctaaaaa 296
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagaatccccatcatatgaagagttggaaacatagctgaacttatttagctaaaaa 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)