BAC Information

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BAC

Clone NameMSMg01-150G06
ChromosomeX (Build37)
Map Location 93,098,305 - 93,098,531
singlet/doubletsinglet
Overlap geneA130028J20Rik
Upstream geneGm371, 9630042H07Rik, Arhgef9, LOC619688, LOC100042189, 2810002O09Rik, Asb12, LOC668202, AK129302, 1700010D01Rik
Downstream geneLas1l, Msn, Psmb7-ps1, LOC668221, Vsig4, B230358A15Rik, Heph, Gpr165, LOC675824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150G06.T7 (MSMg01no150_g06.b1)MSMg01-150G06.TJ (MSMg01no150_g06.g1)
ACCAG352845AG352846
length734778
length of high quality
(start - end)
228 (79 - 306)277 (114 - 390)
definitionCHROMAT_FILE: MSMg01no150_g06.b1 PHD_FILE: MSMg01no150_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:56 2005CHROMAT_FILE: MSMg01no150_g06.g1 PHD_FILE: MSMg01no150_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACGCACCAATCCGC
GGAATTCAGTCCATTTCCCAACACAGTGTAGCAGAAGTGACTCATTTGGC
AGAGAAGGGTCCCGAGTGCTCTTCTGGATAATGCAAGGCCACATCCTTTT
TTTTTTTTTTAACTTTTATTTAACATGTTTTCCTTTCTTTTCTTTTTTCA
TGACCACATTCCTTATATTCTTTTTTTTTAAAATTACATCTCTCCTAGTG
AATGTTTAACTTCACAGCTTGCTTTCCATTACCGTTGCTATTTTATTTTC
TAGCGTGATTGCCATATACCATTCTTTGACTAAATTTAAATTGCATTTTT
CCTTATAACTTACTTTAGTGGTGTTGCTAGAGCAGCACCTGGCTTTCTTC
TCTTTCAGTGTTGCCCCCCCCCCCTCAAAAATAACGCTGACTTGTAAAAT
ATTCCCAAAATAAAGGTAGAATAGACACTCACCTCAACAAATGCCCAAAT
CACACTTTACAACTACAAGACATAGGGAAACGCCCGAAAATACCACTCTT
GAACGACCACCGTGCTTAATATTTAAACCCCCACATGCTCCCTGGTTGCA
CCCCTTACTAAGAACCCCAAACTCACCTTGAACAATGATCACCGCCCCCA
AGGACCCAGCTCTATTAATTGTTACCACACCGACCCCCATTTTTACAAAT
TAATCACCATCAACTCCTCATTTTCACCCTTTGC
TCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGGCTCTTGTTTTTTTGCACT
TTGGCTAGTTGTAGGTCTCTGTGTTAATCACCCTCTATACCAAAGAGAAA
GAATCTTTGATGAAAGTCAAGAGATACATTAATCTCTGGATATGACAATT
ATTGTGTTGAGGTATGTTTCACTCATCCCTAGTCTCTCTAGGGCTATTTT
CATCAAGGAATGTTGGATTTTGTCAAAGGACTTTCTTGTATCAAGACGAT
CATGTGCTTTCTATCCTTGACTATTTATGTGAATTGCATTTTCCCTTTGG
TTTATAGATGATGAACAATCCCATTATTTCTGGATGAAGTCAGTTTCCGT
GTTTTAAAAAAAAAAATTACCCCCCCTGTTTTCCCAGAGGATTGAGTTTC
TACTTCCAGTTTTCTTATGCCCCTTATCCAACACCTGTCCCTCCCAGGTA
ATCCCCCCCCTCCCTTTAGCCCCTGCCCCCCCCTTTTTCTCATTTAGTCT
GCCCTCTTTTTACACTTTTTCCCCCCCCCTACCCTTGTTTTTATTTTTTT
CTTTTACCCCCCGCTTGTACTCCTTGTCCATTTTTTTAAACCCCTTAATT
CCGCCGCCCCCCCACTACCATTCTCTTATACCCCTTTTATGTTTCTTTAA
TTATCGAAACTCTTTTATTTGTCCCTAACCAATTCTTACCCCCCTCACCG
CATTATTTTCGCTTACCTCATTTTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_g06.b1 MSMg01no150_g06.b1 CHROMAT_FILE:
MSMg01no150_g06.b1 PHD_FILE: MSMg01no150_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:56 2005
         (228 letters)



>mm_chrX_93098108_93098734
          Length = 627

 Score =  410 bits (212), Expect = e-119
 Identities = 223/228 (97%), Gaps = 4/228 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagcagaagtgactcatttggcagagaagggtcccgagtgctcttctggataatgcaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tagcagaagtgactcatttggcagagaagggtcccgagtgctcttctggataatgcaagg 257

                                                                       
Query: 61  ccacatcctttttttttttttt---aacttttatttaacatgttttcctttcttttcttt 117
           ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||
Sbjct: 258 ccacatcctttttttttttttttttaacttttatttaacatgttttcctttcttttcttt 317

                                                                       
Query: 118 tttcatgaccacattccttatattctttttttttaaaattacatctctcctagtgaatgt 177
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 318 tttcatgaccacattccttatattctttttttttaaa-ttacatctctcctagtgaatgt 376

                                                           
Query: 178 ttaacttcacagcttgctttccattaccgttgctattttattttctag 225
           |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 377 ttaacttcacagcttgttttccattaccgttgctattttattttctag 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 627
Length adjustment: 9
Effective length of query: 219
Effective length of database: 618
Effective search space:   135342
Effective search space used:   135342
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)