BAC Information

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BAC

Clone NameMSMg01-151H21
ChromosomeX (Build37)
Map Location 70,583,935 - 70,643,850
singlet/doubletdoublet
Overlap geneZfp275, Gm369
Upstream geneMagea10, Gabra3, Gabrq, Magea9, Cetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169
Downstream geneZfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151H21.T7 (MSMg01no151_h21.b1)MSMg01-151H21.TJ (MSMg01no151_h21.g1)
ACCAG353641AG353642
length728731
length of high quality
(start - end)
515 (44 - 558)655 (75 - 729)
definitionCHROMAT_FILE: MSMg01no151_h21.b1 PHD_FILE: MSMg01no151_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:18 2005CHROMAT_FILE: MSMg01no151_h21.g1 PHD_FILE: MSMg01no151_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:18 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(70,643,342 - 70,643,850)(70,583,935 - 70,584,588)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGG
AATTCGCCAACAATTCAAACCAAAGTTTGATCCCCCAACAAATACCAAAT
AATAGGGGGTCCTGGAGTGTGATCTTCCTGCCTCCGGTCCCTGAAGTCGA
GTCACAGGATACATTCAATTTCCCTGCACAGGCCCATGGGCAAGCTTTGG
AAGGGGCTTCAGGTGGGGCAGGGGTCTCGGGCAGGTCAGGGGCTGCAGTT
GAGGAAGGAGACATAGATGAGACAGGGGTTGTGGGCGAGGCAGGAGGACC
AGCTGAGAAAGGAGCCACAGATGAGGCAAGAATGCCTGGCGAGGAAGGAG
CAGGTAAGGCCAGAGGAGGAGCTGCAGTTCCTGTGTCCTTCCTACAGGAG
GCCGGAGCTGCAGCAGCTCACGCAAGACTGTCAGATGAGGAAGGAGCAGA
GGGGGAGGGGGAAACAGGTGAGGCAGGAAGAGCAGTGGAGGGAGGAGCTG
CAGCTGAGGCAAGCTTGTCGGATGAGGAGGGAGCAGAAGATGAAGAAGGA
CTTATAGACGAGGCAGAAGTTATATATGAGGCATGAGTTATAGATGAAGC
AAGGCTGTCATACTATGTGGCTCTGGATGGTTAAGACGACGTAGTTGAAT
GAAGGCCCGTCTAATATTTATATTACTCCATTCCATTATTATACACCCTA
CCTAAACATTATTAAATTTCTATAATAC
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACTACATCAAACTCTTTTTTAAAA
TTAAGTTTGTTTACAAACTCTAGGGCTATTCATATTTTGTTATGCTTCTG
GGTTTGGAAAATTGACTTGTGTCCATTTTATCTAACTTCTTAAATGATGG
GTGTGAAACTTCTCATTATATGCCCTCTTTCTTCTCTTAATACCTACATG
ATCTGTGGTAATGTATTTCTCATTTCTGATACCAATGATTCCATATATCA
CTTTTTTCTTATTTAACCTTCCAAGGGTTATGTATGATTTGCTCATTTTA
TTCCCAGTTTGTCTTTTTCTATTACGTTGATCTCTGCTCTTGTCTCTAAT
ACCTCCTTACTTGTACTTACTTATGTTTCACTTACTTTGCTATTCTTCTT
TTCTGGTCTTGGTAGTGAGCTTCTGCCTCATAAAATGAAAAAAAAAGACA
ACTATAAATCAATATGCTTTATGAACTCATACATAAAACATTCTAAAAAA
CATTTTTAGCAATGTGACTTTTAAAGTGTTAAAGGGTTGCACACCATGAC
GAAAGTTGCTCAAGGAAATACAAATCAAAATGTAATTCAATTTATTAACA
AATGAAGAAAGGAAGAACTGGATAATTAGCTCAGTAATTGCAACATAAAC
ATTTGAGAAACTCCAACATCCACTGCAGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_h21.b1 MSMg01no151_h21.b1 CHROMAT_FILE:
MSMg01no151_h21.b1 PHD_FILE: MSMg01no151_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:18 2005
         (515 letters)



>mm_chrX_70643136_70644050
          Length = 915

 Score =  946 bits (489), Expect = 0.0
 Identities = 504/509 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcgccaacaattcaaaccaaagtttgatcccccaacaaataccaaataataggggg 66
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gaattcgccaacaatttaaaccaaagtttgatcccccaacaaataccaaataataggggg 656

                                                                       
Query: 67  tcctggagtgtgatcttcctgcctccggtccctgaagtcgagtcacaggatacattcaat 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tcctggagtgtgatcttcctgcctccggtccctgaagtcgagtcacaggatacattcaat 596

                                                                       
Query: 127 ttccctgcacaggcccatgggcaagctttggaaggggcttcaggtggggcaggggtctcg 186
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 595 ttccctgcacaggcccatgggcaagctttggaaggggtttcaggtggggcaggggtctcg 536

                                                                       
Query: 187 ggcaggtcaggggctgcagttgaggaaggagacatagatgagacaggggttgtgggcgag 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ggcaggtcaggggctgcagttgaggaaggagacatagatgagacaggggttgtgggcgag 476

                                                                       
Query: 247 gcaggaggaccagctgagaaaggagccacagatgaggcaagaatgcctggcgaggaagga 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gcaggaggaccagctgagaaaggagccacagatgaggcaagaatgcctggcgaggaagga 416

                                                                       
Query: 307 gcaggtaaggccagaggaggagctgcagttcctgtgtccttcctacaggaggccggagct 366
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 415 gcaggtaaggccagaggaggagctgcagctcctgtgtccttcctacaggaggccggagct 356

                                                                       
Query: 367 gcagcagctcacgcaagactgtcagatgaggaaggagcagagggggagggggaaacaggt 426
           ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 355 gcagcagctcaagcaagactgtcagatgaggaaggagcagagggggaggggggaacaggt 296

                                                                       
Query: 427 gaggcaggaagagcagtggagggaggagctgcagctgaggcaagcttgtcggatgaggag 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gaggcaggaagagcagtggagggaggagctgcagctgaggcaagcttgtcggatgaggag 236

                                        
Query: 487 ggagcagaagatgaagaaggacttataga 515
           |||||||||||||||||||||||||||||
Sbjct: 235 ggagcagaagatgaagaaggacttataga 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no151_h21.g1 MSMg01no151_h21.g1 CHROMAT_FILE:
MSMg01no151_h21.g1 PHD_FILE: MSMg01no151_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:18 2005
         (655 letters)



>mm_chrX_70583733_70584788
          Length = 1056

 Score = 1187 bits (614), Expect = 0.0
 Identities = 645/656 (98%), Gaps = 3/656 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcactacatcaaactcttttttaaaattaagtttgtttacaaactctagggctattcata 60
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tcactacatcaaact--tttttaaaattaagtttgtttacaaactctagggctattcata 260

                                                                       
Query: 61  ttttgttatgcttctgggtttggaaaattgacttgtgtccattttatctaacttcttaaa 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttgttatgcttctgagtttggaaaattgacttgtgtccattttatctaacttcttaaa 320

                                                                       
Query: 121 tgatgggtgtgaaacttctcattatatgccctctttcttctcttaatacctacatgatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatgggtgtgaaacttctcattatatgccctctttcttctcttaatacctacatgatct 380

                                                                       
Query: 181 gtggtaatgtatttctcatttctgataccaatgattccatatatcacttttttcttattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggtaatgtatttctcatttctgataccaatgattccatatatcacttttttcttattt 440

                                                                       
Query: 241 aaccttccaagggttatgtatgatttgctcattttattcccagtttgtctttttctatta 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| 
Sbjct: 441 aaccttccaagggttatgtatgatttgctcattttatccccagtttgtctttttctattt 500

                                                                       
Query: 301 cgttgatctctgctcttgtctctaatacctccttacttgtacttacttatgtttcactta 360
           | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttgatctctgctctcgtctctaatacctccttacttgtacttacttatgtttcactta 560

                                                                       
Query: 361 ctttgctattcttcttttctggtcttggtagtgagcttctgcctcataaaatgaaaaaaa 420
           ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttgctattctttttttctagtcttggtagtgagcttctgcctcataaaatgaaaaaaa 620

                                                                       
Query: 421 aa-gacaactataaatcaatatgctttatgaactcatacataaaacattctaaaaaacat 479
           || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagacaactataaatcaacatgctttatgaactcatacataaaacattctaaaaaacat 680

                                                                       
Query: 480 ttttagcaatgtgacttttaaagtgttaaagggttgcacaccatgacgaaagttgctcaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttagcaatgtgacttttaaagtgttaaagggttgcacaccatgacgaaagttgctcaa 740

                                                                       
Query: 540 ggaaatacaaatcaaaatgtaattcaatttattaacaaatgaagaaaggaagaactggat 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggaaatacaaatcaaaatgtaattcaatttattaacaaatgaagaaaggaagaactggat 800

                                                                   
Query: 600 aattagctcagtaattgcaacataaacatttgagaaactccaacatccactgcaga 655
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aattagctcagtaattgcaacataaacatttgagaaactccaacatccactgcaga 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1056
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1046
Effective search space:   674670
Effective search space used:   674670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)