Query= MSMg01no151_o21.b1 MSMg01no151_o21.b1 CHROMAT_FILE:
MSMg01no151_o21.b1 PHD_FILE: MSMg01no151_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:53 2005
(613 letters)
>mm_chrX_147769227_147770239
Length = 1013
Score = 940 bits (486), Expect = 0.0
Identities = 521/536 (97%), Gaps = 8/536 (1%)
Strand = Plus / Minus
Query: 82 atattatatagcaaaatattaaccttctttctcctttcctttt---ttt-tttctttctt 137
|||||| ||||||||||||||||||| |||||||||||||||| ||| ||||||||||
Sbjct: 1013 atattacatagcaaaatattaaccttttttctcctttccttttttctttctttctttctt 954
Query: 138 tttgagacaaggtatcacactgtacctcagcatggcctgaaactcatgctatagccaagg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 tttgagacaaggtatcacactgtacctcagcatggcctgaaactcatgctatagccaagg 894
Query: 198 ctgacctcaaactccatgctatcctccttccttagccttagtcccatatgctaggattac 257
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 893 ctgacctcaaactccatgctatcctccttccttagcc----tcctatatgctaggattac 838
Query: 258 aggcatgaagtaccacacacaacttaaccgttgctagatgtatggttcaatgctgctaag 317
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 837 aggcatgaagtaccacacacaacttaaccgttgttagatgtatggttcaatgctgctaag 778
Query: 318 cacactcttttatggtataaccaaaacactatttttaaaatatacaaagcattccccagg 377
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 777 cacactcttttatggtataaccaaaacactatttttaaaatatacaaagcactccccagt 718
Query: 378 tagttctcaggcactcagggctgagaggcagcaagctgcactgaatggaggtgtttgtca 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tagttctcaggcactcagggctgagaggcagcaagctgcactgaatggaggtgtttgtca 658
Query: 438 atattaaattcctgaggacagttcctcatctgaaacacataatgggtaccaatcccacct 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 657 atattaaattcctgaggacagttcctcatctgaaacacataatgggtaccaatcccatct 598
Query: 498 aatgctaactttgctctaagccttccctccctccatctcaagtcaggctcctatcatcat 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aatgctaactttgctctaagccttccctccctccatctcaagtcaggctcctatcatcat 538
Query: 558 ctctgttattttcctttattcctgtcttgaaaatctatccaagacccatctatcct 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ctctgttattttcctttattcctgtcttgaaaatctatccaagacccatctatcct 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no151_o21.g1 MSMg01no151_o21.g1 CHROMAT_FILE:
MSMg01no151_o21.g1 PHD_FILE: MSMg01no151_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:53 2005
(495 letters)
>mm_chrX_147700341_147701235
Length = 895
Score = 957 bits (495), Expect = 0.0
Identities = 495/495 (100%)
Strand = Plus / Plus
Query: 1 agagattcacctctaggtgccgagattaaaggttgcattaccatacctgccaaaacactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagattcacctctaggtgccgagattaaaggttgcattaccatacctgccaaaacactc 260
Query: 61 ttaacatgtaatgaaaaagtcttaagtaagatatacttgttgtaataatgtcagtaatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaacatgtaatgaaaaagtcttaagtaagatatacttgttgtaataatgtcagtaatat 320
Query: 121 ggttgatatagctattggataatagagagagtctagctggtttacaaagtagaaaaaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttgatatagctattggataatagagagagtctagctggtttacaaagtagaaaaaagt 380
Query: 181 ttaacaatgatattgtttgaaatagcaaattgtatcttagcatgaattttgctgttataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaacaatgatattgtttgaaatagcaaattgtatcttagcatgaattttgctgttataa 440
Query: 241 taataggtattattactatactctttacagcctgtatcccaaccaattggagctgaacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taataggtattattactatactctttacagcctgtatcccaaccaattggagctgaacaa 500
Query: 301 caagcaactcttcaaaatccagattttgttcgaaggtaagtatcattatcttagtaccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagcaactcttcaaaatccagattttgttcgaaggtaagtatcattatcttagtaccag 560
Query: 361 gaaatcagtggtggcatgctgctgtatgtccttgtatgcttagagtaccttgaataaagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaatcagtggtggcatgctgctgtatgtccttgtatgcttagagtaccttgaataaagc 620
Query: 421 gagttttaaacttcttgtatttgtgcaagattaataaaattgggataaatttactttatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagttttaaacttcttgtatttgtgcaagattaataaaattgggataaatttactttatt 680
Query: 481 ttaatatttatagta 495
|||||||||||||||
Sbjct: 681 ttaatatttatagta 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
