Query= MSMg01no152_f10.b1 MSMg01no152_f10.b1 CHROMAT_FILE:
MSMg01no152_f10.b1 PHD_FILE: MSMg01no152_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:24 2005
(546 letters)
>mm_chrX_166282619_166283564
Length = 946
Score = 1013 bits (524), Expect = 0.0
Identities = 542/550 (98%), Gaps = 4/550 (0%)
Strand = Plus / Plus
Query: 1 ccaaaggacatagcacatatgctatcaaatctgcaattaaataccaatactttctctttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ccaaaggacatagcacatatgctatcaaatctgcaattaaataccaatactttctctttt 256
Query: 61 caggctttttgggggagcaagatataattttcctattaaaacagtgtcctgttcctcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 caggctttttgggggagcaagatataattttcctattaaaacagtgtcctgttcctcttt 316
Query: 121 cttttcatcccttttaggagacatagtacctctttaaaattgtaaatctaatacagttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cttttcatcccttttaggagacatagtacctctttaaaattgtaaatctaatacagttgt 376
Query: 181 tctagtttaaaaaaataatgccggacgttatagcaa----caaacaaacaaaaaaacaaa 236
|||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||
Sbjct: 377 tctagtttaaaaaaataatgccagacgttacagcaaaaaacaaacaaacaaaaaaacaaa 436
Query: 237 aacaaaaacaaaaaaattgataatttgttattcattatattactgagttttacttttagg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aacaaaaacaaaaaaattgataatttgttattcattatattactgagttttacttttagg 496
Query: 297 aaataattgaacactttttagtttatttggctgaagggaaagagaaggaaaatttttatt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaataattgaacactttttagtttatttggctgaagggaaagagaaggaaaatttttatt 556
Query: 357 gtgatatgttttatgctcctgatatgccttctatatagcacctgtgtgacatcatcttct 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gtgatatgttttatgctcctgatatgccttctatatagcacctgtgtgacatcatcttct 616
Query: 417 tttcttatctctaatatcttttattgatttctggtcattggtgatctcttaatattggag 476
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 617 tttcttatctctaatatcttttattgatttctggtcagtggtgatctcttaatattggag 676
Query: 477 ctcaccatagtgatagatgaaaccatgaacctgtgcacctgactggatagcaatctataa 536
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 677 ctcaccatagtgatagatgaaaccatgaacctgtgcacctgactggatagtaatctataa 736
Query: 537 attaataatg 546
||||||||||
Sbjct: 737 attaataatg 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no152_f10.g1 MSMg01no152_f10.g1 CHROMAT_FILE:
MSMg01no152_f10.g1 PHD_FILE: MSMg01no152_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:24 2005
(462 letters)
>mm_chrX_166410372_166411233
Length = 862
Score = 681 bits (352), Expect = 0.0
Identities = 419/462 (90%), Gaps = 34/462 (7%)
Strand = Plus / Minus
Query: 1 attgattgaatttacaacaatgaggagttacctctgtgctgtgagttttcttagctcccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 attgattgaatttacaacaatgaggagttacctctgtgctgtgagttttcttagctcccg 449
Query: 61 ctagcatgggaatgttattttcctcacgaattctcagactcggaatacatggacaacttc 120
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 448 ctagcacgggaatgttattttcctcacgaattctcagactcagaatacatggacaacttc 389
Query: 121 aggaagaggaaaaggaagaagtagagtctaggaacctatgatgtgaagcaggaaattctt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gggaagaggaaaaggaagaagtagagtctaggaacctatgatgtgaagcaggaaattctt 329
Query: 181 ttcaactgtactgactgaaaagaatagcttgctggtgcccaacatattccagcacatctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttcaactgtactgactgaaaagaatagcttgctggtgcccaacatattccagcacatctt 269
Query: 241 tggaagtcccttaatagtgtggcattttcccatggatgggtgattattttgcaggaagat 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tggaagtcccttaatagtgtggcattttcccatggatgggtgattattttgcaggaaga- 210
Query: 301 aaaataaataacaaacagaaataaaaaaggaaaaggacaggaaggaacatgactggtcct 360
|||| |||||||||| |||||||||||| |||||||
Sbjct: 209 -----------caaa-----ataaaaaaggtaaaggacaggaaagaacatg--------- 175
Query: 361 ggggtagggcaccaaatgaagtaaaaagaaataaaagaaaaagatgaatgctcctgggta 420
|||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 174 --------gcaccaaatgaagtaaaaagaaataaaagaaagagatgactgctcctgggta 123
Query: 421 tggtagaggagaaaggtttttatagatatgtgggagagcata 462
|||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 122 tggtagaggagaaaggtttttatagatacgtgggggagcata 81
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
