BAC Information

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BAC

Clone NameMSMg01-156C22
ChromosomeX (Build37)
Map Location 159,706,547 - 159,706,833
singlet/doubletsinglet
Overlap genenone
Upstream geneReps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g
Downstream geneLOC100040610, EG637051, Grpr, 1700045I19Rik, Ap1s2, Zrsr2, Car5b, Siah1b, Tmem27, Ace2, Bmx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156C22.T7 (MSMg01no156_c22.b1)MSMg01-156C22.TJ (MSMg01no156_c22.g1)
ACCAG356987AG356988
length735750
length of high quality
(start - end)
319 (36 - 354)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no156_c22.b1 PHD_FILE: MSMg01no156_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:15 2005CHROMAT_FILE: MSMg01no156_c22.g1 PHD_FILE: MSMg01no156_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGT
TCCCCATTTTTTATCAAGGTTATTTGGTTCTCTGGAGTCTAACTTCTTGA
GTTCTTTGTATATATTGGATACTAGCCCTCTATCGGATGTAGGGTTGGTA
AAGATATTTTCCCAATCAGTTGGTTGCCATTTTGTCCTATTGACAGTGTC
CTTTGCTTTACAGAAGTTTTGCAATTTTATGAGGTCCCATTTCTTGATTC
TTGATCTTAGAGTGTAAGCCATTGGTGTTCTGTTCAGGAAATTTTCCCCT
ATGCCCATGTGTTCGAGGCTTTTCCCCACTTTCTCTTCTATTAGATTCAT
TGTTTTTCTTTCCACCCCCCCCCCCTAGATCCACTTGGACTTGAGCTTTG
TATAGGCAGATACAATGGATCAATTTGCATTCTTCTACATGCTGACCTCC
AGTTGAACCAGCACCATTTGTTGAAAATGCTGTCTTTTTTTCCCACTGAA
AGGTTTTAGCTCCTTTGTCAAAAATCAAGTGACCATAGGTGTGTGGGTTC
TTTTCTGGGTCTTCAATTTTATTCCATTGATCTACCTGCCTGTCACTGTG
CCATGCAGTTTTTATCACAATTGCTCTGTAGTACAGGTTCAGGTCAAGGA
TGGTGATTCCACCAAAAGTTCTTTCGTTGTAGAAAATAGCTTTCACTATC
CTGTTTTTGGTTGTTGTTGTTGTTGTTATTCCAAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATATCCATTAGCTTCAGTCTTCA
GAATGTGTGATGTTATTAGAATGAGAATTCTTTTCCCCTAGGGAGAAAAG
ACAGAAGGCAAGGTTGCTTTATGATTAATTTATTTGACAAGTACTCAGTG
GGTATGTTTTCTGGGGAAGGTGCTCCTGGGAGTACAGGATGCAAAGATGA
ATAAAGCCCGATCCTTCCTCTCAGGAACTCCTGTCTGACAAGGGAGTCAG
GCATGTTAAATAATTACCATACAAAGTGAAGGATGTGGTAAGAAGGAGAA
ATGCTGCTTTGTGTTTGTGATTCCCGACGACCCCCATGTGTGAGGGTACC
CAAGGCCTTTCTGGAAAACTCATACTCTGAAAACAAACCAGACTACTGAC
GGAGACAAAGTCATGCTGAAATAAAAATCACCAACAGGATGTTTTCCTCT
TTTTGCACACATGAAGATGGTGGAGGAACAGTTGTCCAATTCAAAGTCCA
AACAAAACAGTATTACTCTAGCTGATTCTTTTCTCCCTGTTACTCTAAAT
TTATACAGCCAGATTTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT
CCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCATTC
TTTCTTTCTTTCTTCCTCTTTCTTTTTAAACCTCTGATATATTCAAGCTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_c22.g1 MSMg01no156_c22.g1 CHROMAT_FILE:
MSMg01no156_c22.g1 PHD_FILE: MSMg01no156_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:15 2005
         (289 letters)



>mm_chrX_159706347_159707035
          Length = 689

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatatccattagcttcagtcttcagaatgtgtgatgttattagaatgagaattcttttcc 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatatccattagcttcagtctttagaatgtgtgatgttattagaatgagaattcttttcc 260

                                                                       
Query: 61  cctagggagaaaagacagaaggcaaggttgctttatgattaatttatttgacaagtactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctagggagaaaagacagaaggcaaggttgctttatgattaatttatttgacaagtactc 320

                                                                       
Query: 121 agtgggtatgttttctggggaaggtgctcctgggagtacaggatgcaaagatgaataaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgggtatgttttctggggaaggtgctcctgggagtacaggatgcaaagatgaataaag 380

                                                                       
Query: 181 cccgatccttcctctcaggaactcctgtctgacaagggagtcaggcatgttaaataatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccgatccttcctctcaggaactcctgtctgacaagggagtcaggcatgttaaataatta 440

                                                          
Query: 241 ccatacaaagtgaaggatgtggtaagaaggagaaatgctgctttgtg 287
           |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 ccatacaaagtgaaggatgtggaaagaaggagaaatgctgctttgtg 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)