BAC Information

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BAC

Clone NameMSMg01-156M05
ChromosomeX (Build37)
Map Location 132,278,134 - 132,278,404
singlet/doubletsinglet
Overlap geneGprasp1
Upstream geneLOC100040520, Armcx6, Armcx3, Armcx2, LOC637800, LOC100040987, Nxf2, B930008K04Rik, EG621246, LOC100040635, Tceal6, EG621322, Pramel3, EG621352, EG331529, EG621380, EG666040, EG666045, AV320801, EG621467, Nxf7, 4930534P07Rik, 1700008I05Rik, 1700129I15Rik
Downstream geneGprasp2, Bhlhb9, LOC100041110, 2900062L11Rik, 6530401D17Rik, Bex2, Nxf3, Bex4, Tceal8, Tceal5, Bex1, LOC100040972, Wbp5, Ngfrap1, LOC666180, LOC237048, LOC666196, Kir3dl2, LOC100041079, Kir3dl1, Tceal3, Tceal1, Morf4l2, BC065397
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156M05.T7 (MSMg01no156_m05.b1)MSMg01-156M05.TJ (MSMg01no156_m05.g1)
ACCAG357419AG357420
length741876
length of high quality
(start - end)
275 (36 - 310)162 (127 - 288)
definitionCHROMAT_FILE: MSMg01no156_m05.b1 PHD_FILE: MSMg01no156_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:58 2005CHROMAT_FILE: MSMg01no156_m05.g1 PHD_FILE: MSMg01no156_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGA
TTCCCTTTCTTTTTGTCATCCCCCCATGACACCCCCAAATCTCCACGTTC
CTCTGCTATATTCTTAAAGCCTGATCATTTCCATGAAGGGACAACTAAAT
CATCTCTGCACAGTTGGTCGTACTGGTAGCAGTAGGGATGAAACGCCTGA
CAATAACAGGAAGCTGGGGAAATAATGAAAAGTATCATTTTCAATTTTCT
TACACATTCTTATGATTATCCCCCACCCACCCACACAAACCTATCACATT
CTGCAACATAGTTGGTGTAACGCGGAGGGCATTTCTGGAAGGCTGGAATA
TTTTTTTGTACCCCCCCCCCCCCAACCCTATCTAGTCTTGCAGTTTTCTC
CCACAGCACCCAATTCAAAACAAATATGTTTATCTTCTCCCCTCCCCTTT
TGATCTGCCGTCCTGTAACGTGAAGAAATGCAAACTTGATACTTAATCTA
TCCACACAAATGAATGTGTGATAGCCCCTAATCTAATGATATCGCACTGA
TTAAGATATGGTCAATTAATGTTCAGATAAAAAAGTGTCATCTTTCGATT
ACACCCTAAACAAAATTTAATGGTTCCCCTTTCAATAACCCCCTTTGTGG
TATCCCCTTCCTGGAATTTTAAGGGTTCCTCATAAATTATGTGTCTTATT
ATATGGGTGGATGGTCCCTTTTCTCTGGATATATTTCCGTT
GTGTTTTTATTTTTTTTATTTTCTTTCCAAAAANNNNATTTNTTTNTTTT
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATTGCGTGACGATGTTCTCGAT
ACTCTGTTTTCAATAGATTTGGAACCCAAGCTAAGTGACTGTTATAAAAC
AGGTCCAGATGCAACTGAGGGAGGAAAAGGTGTGTTTGGCTTACAGTTCC
AGTCCCAGCCCATCATTGTAGGAAGGCAGGAAACTGAACAGGAACAGAAG
ATGGATAACATGGAAGAAAGCTGTTTAGTGTGCTTTTGTGGTTTGCTCAG
CTACCTGTCTCATACTACTTGTCTTATTAGCTCATAGTAGCCTGGGCCCT
CCTTCATCAACTCTTATTCAAAATTAATGTCCTACAGATTTGCGCATAGG
TCATTCTGATGCTAGGCACCCCCCCCTTTCCTTGACTCTAATTTGGCGTC
CTTGTTTACTTTATTTTTTCTAGTACCTTTAGATCCTCTTGTTTAATTTG
TTCTATCTTTCTTACTTACACTTATAACCTTTTTGCTTATCCCCCCACAA
TAATTATATAAATTTACATTCTATTTCTTATTATATATCTCATTTTCTTA
TATACCTTTTTTATTACTTTTGTATTTTTTTTTTCTCGTCCCAATCATCC
TATACATCCTCTCATCCTCTCTTCTAGTTACCCTCCATCCCCCTCTCTTT
CATTCAACTAATCCCTTCTTTCACTTTACATTATACACATCTCATTTATA
TAAATATCTTTTTAATTTCCTAATATTTTACCCCTTTCCACGTCAATTAT
CTCCATTTCATATTTAAATTTCCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_m05.b1 MSMg01no156_m05.b1 CHROMAT_FILE:
MSMg01no156_m05.b1 PHD_FILE: MSMg01no156_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:58 2005
         (275 letters)



>mm_chrX_132277930_132278604
          Length = 675

 Score =  524 bits (271), Expect = e-153
 Identities = 271/271 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgattccctttctttttgtcatccccccatgacacccccaaatctccacgtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gaattctctgattccctttctttttgtcatccccccatgacacccccaaatctccacgtt 416

                                                                       
Query: 65  cctctgctatattcttaaagcctgatcatttccatgaagggacaactaaatcatctctgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cctctgctatattcttaaagcctgatcatttccatgaagggacaactaaatcatctctgc 356

                                                                       
Query: 125 acagttggtcgtactggtagcagtagggatgaaacgcctgacaataacaggaagctgggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 acagttggtcgtactggtagcagtagggatgaaacgcctgacaataacaggaagctgggg 296

                                                                       
Query: 185 aaataatgaaaagtatcattttcaattttcttacacattcttatgattatcccccaccca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aaataatgaaaagtatcattttcaattttcttacacattcttatgattatcccccaccca 236

                                          
Query: 245 cccacacaaacctatcacattctgcaacata 275
           |||||||||||||||||||||||||||||||
Sbjct: 235 cccacacaaacctatcacattctgcaacata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)