BAC Information

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BAC

Clone NameMSMg01-156N21
ChromosomeX (Build37)
Map Location 111,332,800 - 111,333,114
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664918, Dach2, LOC237016, EG664945, EG634881
Downstream geneLOC100039201, Klhl4, Gm1866, EG546361, EG237009, 4930524E20Rik, LOC237008, EG664969, EG546362
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156N21.T7 (MSMg01no156_n21.b1)MSMg01-156N21.TJ (MSMg01no156_n21.g1)
ACCAG357497AG357498
length728731
length of high quality
(start - end)
318 (46 - 363)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no156_n21.b1 PHD_FILE: MSMg01no156_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:06 2005CHROMAT_FILE: MSMg01no156_n21.g1 PHD_FILE: MSMg01no156_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACACAGGTGAAGATAAGGAAAGATTCCAGGTCTACCGTAAGACTC
TAATGGAGTTCTCTGGGCTTACTGCCCCACTAATTTGCCTAGATAGGGGA
TGTTAGACAAGAGGATATATGGAGTCCCCTATAGCTTTTCTAGAAAGAAT
TATGACTACATTCCAGACCTATACCCCGCTGGACCAGGAATCATCAGAGA
ACAATTTAGCAGTGATGATAGTTTTTGTCAACCAAGTAATTACAGACATA
AAGCATAAATTACAGAGAGTAGATAGGATGCAGAAAAAGTCCCTACAAGT
TATGTTGGTGGTTGATTTTAAAGCCCCCCCCCTACCAAGTGTTCATTGAG
GACAAACAGGCCTACTCCACCTCCCAACACTGAACTTGGCCAAAATCTTG
CTAGTATCCATAACAAGCACTAAGGCAGAGAAACAACTGCAATTTTGAAA
TCTAGTGGGTGACAAAGGTAAGAAACTATGGACAAGGGACAAATCTGGAC
TCCAAAAGAACCAATATTCATATTGTAAAAATAATAGGAAACAGTGTAGA
TGAGGAATGGGATGAGGAACTGGTAAGGTGGACTGGGCGGGTCTTTTTTC
CTCCCTTTCCCCCCTTCTCTTTTTTTCCGTCCTTTTTTCCCCCTTTTTTC
CTTTCCCCTTCCTTCCTATCCTTTTCGG
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACAGGAAGACCAACTGAGTCAAC
AAATCTGGGGCTCCCAGAGACTGAACCACAGGTTGGGCGTAGTCCTCTCT
GCACAAATGTAGTGGATGAGCAGCTTGGTCTTCATGTGGGTCCTGAACAA
CTGGAGCAGGGGCTATCCCCAAAACTGTTGCTTTTCTATGGAAAATGTTC
TTCTAGCTGAGCTGCCTTTCTGGCCTCAGTGGGAAAGATATGCCAAGCCT
TGCAGAGACTTTAAGTGCTAGGGTGGGGGTTATCCAGAGGAACCCACCCA
CTCAGAGGAAAATATTTTTTTTAACCCCCCCCCCAGTAGTGTCTGGGAGA
GGGGCAGTGAGTAGGATGCAACGCGAATAAATAAAAAGAAATATGAGCTT
GTGACTGCATCTTCACATGCATTATTAGGAATAACTCCTTCGCTGAGGCA
TTAAGAAATGTGTTTGGAAAGAAACACTCTGAAAAGCCAAAAGAAAAATA
AAGAAAAGAAACAATTCTTGTTTCAAATTTAATATTCATATTTATTTAGG
CTCATATACAAAATAACTTGTTTAAATCAATATTACTCATTAATTTTCTC
CCCTGTGGCTTTTCCCTTTAATGAATTTTGTTTATGGATATGGTGTTGGT
AAATTTTGTGCTTGAGTACCGATATGTATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_n21.b1 MSMg01no156_n21.b1 CHROMAT_FILE:
MSMg01no156_n21.b1 PHD_FILE: MSMg01no156_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:06 2005
         (318 letters)



>mm_chrX_111332596_111333314
          Length = 719

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%), Gaps = 1/315 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattca-cacaggtgaagataaggaaagattccaggtctaccgtaagactctaatggag 63
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacacaggtgaagataaggaaagattccaggtctaccgtaagactctaatggag 264

                                                                       
Query: 64  ttctctgggcttactgccccactaatttgcctagataggggatgttagacaagaggatat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctctgggcttactgccccactaatttgcctagataggggatgttagacaagaggatat 324

                                                                       
Query: 124 atggagtcccctatagcttttctagaaagaattatgactacattccagacctataccccg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atggagtcccctatagcttttctagaaagaattatgactacattccagacctataccccg 384

                                                                       
Query: 184 ctggaccaggaatcatcagagaacaatttagcagtgatgatagtttttgtcaaccaagta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctggaccaggaatcatcagagaacaatttagcagtgatgatagtttttgtcaaccaagta 444

                                                                       
Query: 244 attacagacataaagcataaattacagagagtagataggatgcagaaaaagtccctacaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attacagacataaagcataaattacagagagtagataggatgcagaaaaagtccctacaa 504

                          
Query: 304 gttatgttggtggtt 318
           |||||||||||||||
Sbjct: 505 gttatgttggtggtt 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 719
Length adjustment: 9
Effective length of query: 309
Effective length of database: 710
Effective search space:   219390
Effective search space used:   219390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)