BAC Information

Click to search

BAC

Clone NameMSMg01-157E01
ChromosomeX (Build37)
Map Location 149,408,019 - 149,408,303
singlet/doubletsinglet
Overlap genenone
Upstream geneHsd17b10, Ribc1, Smc1a, LOC100040394, Iqsec2, Jarid1c, 2900056M20Rik, Tspyl2, Gpr173, LOC207318, EG667113, EG635412, LOC635396, EG667130, Shroom2, Gpr143, LOC100039874, LOC667147, EG624124
Downstream geneUsp51, LOC635253, Mageh1, EG385454, EG436240, Rragb, Klf8, LOC100039932, EG635136, Ubqln2, Cypt3, LOC100039998, LOC667241, Kctd12b, 2210013O21Rik, Smt3h1-ps, Spin2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157E01.T7 (MSMg01no157_e01.b1)MSMg01-157E01.TJ (MSMg01no157_e01.g1)
ACCAG357784AG357785
length709709
length of high quality
(start - end)
319 (41 - 359)285 (71 - 355)
definitionCHROMAT_FILE: MSMg01no157_e01.b1 PHD_FILE: MSMg01no157_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:33 2005CHROMAT_FILE: MSMg01no157_e01.g1 PHD_FILE: MSMg01no157_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:34 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTTAGCTCTGTACCCAGGTTTTAATTGGGTTATTTGATTTCCTGGA
GTCCAGCTTCTTGAGTTCTTTGTATATATTGGATAGTAGTCCCCTATCAG
ATTTAGGATTGGTAAAAATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTC
TTACTGACAGTGTCTTTTGACTTAAAGAAGCATTGTAATTTTATGAGGTT
CCATTTGTTGATTTTTGATCTCACAGCACAAGCCGTTGGTGTTCTGTTCG
AGAATTTTTCCCCAGTGCCCATATCTTTGAGACTTTCCCCCACTTTCTCC
TCTGTATTCTTTTACTCGCCTCCGCCTTTATGTGTAATTCAATGATCCAC
TTAGACTTGAGCTTTGTACAAGGAGATAAGAATGGATCAATTCACATTCT
TCTACATGATAACTGCCAGTTGAAGCAGCACCATTTGTTGAAAATGCACT
CTTTTATCCACTGGATGGTTTTAGCTCCTTTGTCAAAGATCAAGTGACCA
TAGGTGTGTAGGTTCATTTCTGGGTCTTCAATTCTATTCTATTGATCTAC
CTGTCTGTCACTGTACTAGTACCATGCAGTTTTTATCACAATTGCTCTGT
ACTACAGCTTGAGGTCAGGCATGGTGATTCCACCAGAGGTTATTTTATCC
TTGAGAAAN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCACAACTCTGAAGCCAGTGCTTGAGTTACA
TCCACTTTCAAGGGGGAAAGCCAGGCTCAGAGAGGTGAAGGATCTGAGCA
AGTTCACGCTTCAAATGACACAAGAAAAGCAGCATGCCTGGCTATGGGGC
CTCCCTTGGGGGAGTAGGAACTGACTCATTACTCTTTGGGGCAGGCCGAA
ATGAACTTGAGCGAGCGAGGAAGATGCCTGGGAGAAGCAGGTGGTACTTA
GAGAGTGGAGGATGGAGGGGAGGCATTTCAGGCAGAGGAACCTGAGCAGA
GAGAAGGAGTGTACACCGCCCACAGCGTGCACCGAGGGGAGCGAGTCGAG
GCAGGTAAGCTGGCTGGCCGGCCTAGAAATCCAGGATCCAACCGCACCAT
ACCATCTCTCTGCTCCCCATTCCCACCCATTGTCTGAAGCCTGCCTGTGT
GCTCCCTTCAAATGCCTTTCTGTCTCTCAGTCCCCATGGCAACAGCTCAC
TTTCATCCAGCTGCTTCTTATTCTAATTGCTTCCTCTGTGGCCTGCCAGG
AAGTACTCTGGCCTCCGCGAGGCTGCGCAAATCTAAACCTGATCTTCTCA
CTGCCCCCGTTTAATTGACCAGGCGAACACGTATCAGGGTACAGGCTCTG
CGTCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_e01.g1 MSMg01no157_e01.g1 CHROMAT_FILE:
MSMg01no157_e01.g1 PHD_FILE: MSMg01no157_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:34 2005
         (285 letters)



>mm_chrX_149407819_149408503
          Length = 685

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaactctgaagccagtgcttgagttacatccactttcaagggggaaagccaggctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacaactctgaagccagtgcttgagttacatccactttcaagggggaaagccaggctcag 260

                                                                       
Query: 61  agaggtgaaggatctgagcaagttcacgcttcaaatgacacaagaaaagcagcatgcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggtgaaggatctgagcaagttcacgcttcaaatgacacaagaaaagcagcatgcctg 320

                                                                       
Query: 121 gctatggggcctcccttgggggagtaggaactgactcattactctttggggcaggccgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctatggggcctcccttgggggagtaggaactgactcattactctttggggcaggccgaa 380

                                                                       
Query: 181 atgaacttgagcgagcgaggaagatgcctgggagaagcaggtggtacttagagagtggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgaacttgagcgagcgaggaagatgcctgggagaagcaggtggtacttagagagtggag 440

                                                        
Query: 241 gatggaggggaggcatttcaggcagaggaacctgagcagagagaa 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatggaggggaggcatttcaggcagaggaacctgagcagagagaa 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)