BAC Information

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BAC

Clone NameMSMg01-157N19
ChromosomeX (Build37)
Map Location 157,934,200 - 157,934,487
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr64, Phka2, Ppef1, Rs1, Gja6, Scml2, LOC414364, Prkaca-ps1
Downstream geneRai2, Gm47, Nhs, Reps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157N19.T7 (MSMg01no157_n19.b1)MSMg01-157N19.TJ (MSMg01no157_n19.g1)
ACCAG358229AG358230
length738734
length of high quality
(start - end)
329 (373 - 701)301 (67 - 367)
definitionCHROMAT_FILE: MSMg01no157_n19.b1 PHD_FILE: MSMg01no157_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:17 2005CHROMAT_FILE: MSMg01no157_n19.g1 PHD_FILE: MSMg01no157_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTG
TTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTC
CACCTTCTTGTTTTCCTTATATATGTTGGATATTAGTCCCCTATCTGATT
TAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTA
TTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCA
TTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCTGTTCAGGA
ATTTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCT
ATAATTTTCAGTGTCTCTGGCTTTATGTGAAGTTCCTTGATCCACTTAGA
TTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTAC
ATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTC
TTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGT
GTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTC
TGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAA
AGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAG
AAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGA
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGGAGACTAACAAGCCAAAGCACCCAAGTGAGG
ACGCCTCAATCCAATCCCACTTGGGAGGGAGAAGAAAATCAGATTACTTT
TATAGGTCCATCATTGAGAGATCGGGACAGATTAAACAAGACAGGTTCCT
GGTAACAGGAACTGGATCAGAAACCTTGGAGGAACAGTGATGGTGTGCTC
TCTCTGACTGGCACTCAGCCAGCTTTCTCAAACATCCCGAGTCTACTTGC
CCAAGGGTAGGACCAAACATATAGGTCTGGAACCTCCCATATCAATCAGC
AATCTTTTTTTTTCCCACCCCCCCGGCCTAGGGCCAGTCTGATCTGGGCT
ATCCTTCAGTTGAATCCCTCTTCCCAGTTGACTCTTGGTTGTGTCAAGTT
GACAATAAAAATGATTCAGGACAGCCCTGTGCATTGGTTTTGATTTTAAT
AAATGGGAGGAAAACATACTACAAGAATAAAAAAAATCCTACAGCAGATT
GGCATAGCACACTTCAAATTTGAGAAATCTAGCTCTCCCTTTCAAACAGA
TAAAATATTTAGTAACCTCATGTATCCAATGAATTAGCTGAGGTTCTGGA
CTTCAGTTTACTTTGTTACAGGAGGCAAGAGGATTGTCTAATACTGAAGC
CAATAGCTTTAAGCATGTGAAATATGGCTAGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_n19.g1 MSMg01no157_n19.g1 CHROMAT_FILE:
MSMg01no157_n19.g1 PHD_FILE: MSMg01no157_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:17 2005
         (301 letters)



>mm_chrX_157934000_157934700
          Length = 701

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggagactaacaagccaaagcacccaagtgaggacgcctcaatccaatcccacttggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggagactaacaagccaaagcacccaagtgaggacgcctcaatccaatcccacttggga 260

                                                                       
Query: 61  gggagaagaaaatcagattacttttataggtccatcattgagagatcgggacagattaaa 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 gggagaagaaaatcagattacttttataggtccatcattgggagatcgggacagattaaa 320

                                                                       
Query: 121 caagacaggttcctggtaacaggaactggatcagaaaccttggaggaacagtgatggtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagacaggttcctggtaacaggaactggatcagaaaccttggaggaacagtgatggtgt 380

                                                                       
Query: 181 gctctctctgactggcactcagccagctttctcaaacatcccgagtctacttgcccaagg 240
           |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 381 gctctctctgactggcactcagccagctttctcatacatcccgagactacttgcccaagg 440

                                                           
Query: 241 gtaggaccaaacatataggtctggaacctcccatatcaatcagcaatc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaggaccaaacatataggtctggaacctcccatatcaatcagcaatc 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)