BAC Information

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BAC

Clone NameMSMg01-158C08
ChromosomeX (Build37)
Map Location 78,044,543 - 78,044,868
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC211702, LOC667755, LOC211705, LOC654474, LOC629153, LOC546338, LOC100042229, LOC667776, EG629182
Downstream geneTmem47, LOC100041462, LOC100041474, 4930595M18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158C08.T7 (MSMg01no158_c08.b1)MSMg01-158C08.TJ (MSMg01no158_c08.g1)
ACCAG358440AG358441
length710712
length of high quality
(start - end)
329 (31 - 359)312 (374 - 685)
definitionCHROMAT_FILE: MSMg01no158_c08.b1 PHD_FILE: MSMg01no158_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:38 2005CHROMAT_FILE: MSMg01no158_c08.g1 PHD_FILE: MSMg01no158_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAGACTTTT
GCTACAGTATTGTGATACTAGAGATACATTTTAAACAATACTTTAATTTG
TCTTTAATTTTATACATTGCATAAATTGGAGTTTTTGGAGCAATTACTCA
GAATTTGGTAAATATATATATATTTACACAACAGTCACCAGATATCAGAC
ATAACATTTACATGAAACTAACATTTTCTACATTTTCTTGCAATTTTCAT
TCCTGAGTCTTTATCTCTCCAGCCTATGACAGTCCAGTTTTTTTCTCTTT
ACTCTTTCAATGTGGCTACTTTTTCAGAATTGTATATAAATCAAATTGTA
TGTTATGTCAGCATTTTTCCGTGTAGTAGCTTTCATTTGTCATGAGACAT
TTAAGACGCATTGCTGTTGTGTTTGTCAAAAATCAATGTGTTTAATAGCT
TCATTCTATTCCATGCATAATTTAGTTCTTTCAATAATTTATTTTGATTA
ATAGGTATGTTCATTAATATAAAATTTGAATATGTATTATATTTTTACAA
ATACATTCATTGTAAACTTATAAATTCACTGCCATCTCCCTTTGTTCGCC
TAATCCATTTCAATTTCTATTAACCATTATTTTATATTTAATATCACTTC
ATGTAGTGAAAATGCATACATCTTGTTTTATATCTGCCTTCTTTTCACTA
ATGGTTTCAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAAGAAGCTAACCTCAAAAAAACAAACAACCCAATCAAA
AAACTGGGGTATAGAACTAAACAGAGAATTCACAACAAATAAATCTCCAA
TGGCTGAGAGGCACTTAAAGAAATGTTCAAAGTCCTTATTCATCAGGGAA
ATGCAAATTAAAATTACCCTGACACCAATCAGAATGGCTAAGATCAAAAA
GTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGAAATACTCT
TCCATTGCTGGTGGGTCTGCAAGCTGGTAAAACCACTCTGGAAAACAATC
TGGAGGTTCCTCACAAAATTCGCAAAAAGATGTATCTGAAGATCCAGTTG
TACCATTCTTTGGCATACACCCAAAAGCTGCCTCTCCATGTCACATGAGC
ATGTGTTTCACTATGTTTATATGGGCCTTATTTGTGATATCCAGAAGTTG
GAAACAAGCCAAATGCCCCACAATGTAAAAATGGATACTTTTGTTGGAAA
TAATAAAAATAACATCAAGTTCCTGTGCTACACCCAGCTATTTTCTGCCT
GGTTATCTCATTGCCTCTTGGCTAGCCCCACTAGGCCCCACTAGGCAGTC
TTCTCTTTCTCTGGTTCTCCTGCCTCACAGCTGCCTATACCTTCTCAGCC
ATCCACCCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_c08.b1 MSMg01no158_c08.b1 CHROMAT_FILE:
MSMg01no158_c08.b1 PHD_FILE: MSMg01no158_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:38 2005
         (329 letters)



>mm_chrX_78044340_78045068
          Length = 729

 Score =  623 bits (322), Expect = 0.0
 Identities = 325/326 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaaagacttttgctacagtattgtgatactagagatacattttaaacaatactt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ggaattcaaagacttttgctacagtattgtgatactagagatacattttaaacaatactt 470

                                                                       
Query: 64  taatttgtctttaattttatacattgcataaattggagtttttggagcaattactcagaa 123
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 taatttttctttaattttatacattgcataaattggagtttttggagcaattactcagaa 410

                                                                       
Query: 124 tttggtaaatatatatatatttacacaacagtcaccagatatcagacataacatttacat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tttggtaaatatatatatatttacacaacagtcaccagatatcagacataacatttacat 350

                                                                       
Query: 184 gaaactaacattttctacattttcttgcaattttcattcctgagtctttatctctccagc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gaaactaacattttctacattttcttgcaattttcattcctgagtctttatctctccagc 290

                                                                       
Query: 244 ctatgacagtccagtttttttctctttactctttcaatgtggctactttttcagaattgt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ctatgacagtccagtttttttctctttactctttcaatgtggctactttttcagaattgt 230

                                     
Query: 304 atataaatcaaattgtatgttatgtc 329
           ||||||||||||||||||||||||||
Sbjct: 229 atataaatcaaattgtatgttatgtc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)