BAC Information

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BAC

Clone NameMSMg01-158F08
ChromosomeX (Build37)
Map Location 109,312,347 - 109,312,585
singlet/doubletsinglet
Overlap gene4933403O08Rik
Upstream geneCylc1, LOC100042872, Rps6ka6, EG664791, D030011N01Rik, LOC100038989, Tex16, LOC622570
Downstream geneEG385407, Apool, Satl1, EG623341, 2010106E10Rik, Zfp711, Pof1b, LOC623412, EG623428, LOC100039112, Chm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158F08.T7 (MSMg01no158_f08.b1)MSMg01-158F08.TJ (MSMg01no158_f08.g1)
ACCAG358573AG358574
length771760
length of high quality
(start - end)
263 (47 - 309)239 (74 - 312)
definitionCHROMAT_FILE: MSMg01no158_f08.b1 PHD_FILE: MSMg01no158_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:51 2005CHROMAT_FILE: MSMg01no158_f08.g1 PHD_FILE: MSMg01no158_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTACCTCTGTGCTCCATTTTTTATAATGAGGTTATTTGG
TTTTCTGGAGTCCATCTTCTTGAGTTCTTTATATATATCGGATATTAGTC
CACTATCAGATTTAAGATTGGTAAAGATCCTTTCCCAATCTGTTTTTGGC
CTTTTTGTCTTATTGACTCTGTCCTTTGCCTTACAGAACTTTGCAATTTT
ATTATATCCCATTTGTCAATTCTCAATCTTACAGCAGAAGCCATTGCTGT
TCTATTCAGGAATTTTTCGTCGGTTTCCATATCTTCAAGGCTTTTCCTCA
CGTTTTTTTTTTTCCTTTTTGCTTTTTCCCGGAATTATGTGTAGTTAATT
GATCTTGTTATACTTGACAAAAAAAAAAAAAAATATGGGGGGGGGGGTGT
TGGATTCTTCCACATGTGAATTTGCCCGTTTGTCCCGTAACCATTAGGCG
TAAAATGCGTGTCAGTATCTTCGCGTGGCGTGCTTCCCCCTCCAATGTTT
TCTCGGATCAAGTTCTGCTAGCTCTATTCCTCGGACCCTTGTTTCTTCAC
AGCATCCCTGCTGCCTGCACCTCCGGCCGCCCCCTACCCTATTCGTTTCT
CCCATCTGTATGTTTAGGCGCGGAGCGGCGTTGTTTTCGCTAGTTAGGCC
AAACCTTACATATGTTCACTCCCCTCCTCTTACCCCTATATCCGCCAAAC
ATGTACTGTCCGGGCTGGTCA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATTCACTTTGTTATAGTTACATTCAG
AGACAAGTATTTCTTCCTTTTGTATATTCCAAAGATGTTTTGGTTTTGGT
TACCATTGCAATTGTATAACATATATTAAAGTCACAACTTTATGTTTTAA
ATGGACAACTATTTCCATCAAGTTGAAAAACTCCACTGATGGATTTTTAC
TTCTGGATTTTGTTACTACAACAATACATATATTTATTTTATATACTATC
AGTATAGATAATTATTTTTTAATTTAATTACTTCAACACAAGATCTCACA
AGGAATTTTTATCCGTTTTCAGAACCCCNAGACTTATTAAAAGTGTGGAG
ATTATAGGTTTGTAGAAAAAAAAAAAAAAAGTGTTGGTGGCGGCGGATTT
ATATCATATATATACTTATCTTTATATATTATCCCTTTCCATTATTCCCT
TACATTACACAACTAACAAATCCCCCTCGGCATTCTACTGTTTCCCCCTC
TACTTCTTATTTATTCATTATATCTAATCCATACTCCTACCACTTTTTAT
ACCATCTGTGCATTTATTTTTCTCCCCCCCACCCTGTTACCACCCCATTT
TAGAACCTCCCCAGTTACATTTTTATTTACTTCCTTTCTCACCACCACAT
ATTTTTTTTTTTTTTATATAAATATACAATTCTGACCTCTGGTTTTTCCT
CACAACATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_f08.g1 MSMg01no158_f08.g1 CHROMAT_FILE:
MSMg01no158_f08.g1 PHD_FILE: MSMg01no158_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:51 2005
         (239 letters)



>mm_chrX_109312147_109312785
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattcactttgttatagttacattcagagacaagtatttcttccttttgtatattccaaa 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 439 cattcactttgttatagttacattcagtgacaagtatttcttccttttgtatattccaaa 380

                                                                       
Query: 61  gatgttttggttttggttaccattgcaattgtataacatatattaaagtcacaactttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gatgttttggttttggttaccattgcaattgtataacatatattaaagtcacaactttat 320

                                                                       
Query: 121 gttttaaatggacaactatttccatcaagttgaaaaactccactgatggatttttacttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gttttaaatggacaactatttccatcaagttgaaaaactccactgatggatttttacttc 260

                                                                      
Query: 181 tggattttgttactacaacaatacatatatttattttatatactatcagtatagataat 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tggattttgttactacaacaatacatatatttattttatatactatcagtatagataat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)