BAC Information

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BAC

Clone NameMSMg01-158N04
ChromosomeX (Build37)
Map Location 122,667,114 - 122,667,454
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665463, EG665522, LOC100038969, LOC100038978, EG665579, EG665611, EG626048
Downstream geneLOC100040410, LOC100039903, LOC665679, 4932411N23Rik, Gm381, LOC100040472, Gm382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158N04.T7 (MSMg01no158_n04.b1)MSMg01-158N04.TJ (MSMg01no158_n04.g1)
ACCAG358928AG358929
length728730
length of high quality
(start - end)
682 (47 - 728)654 (77 - 730)
definitionCHROMAT_FILE: MSMg01no158_n04.b1 PHD_FILE: MSMg01no158_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:25 2005CHROMAT_FILE: MSMg01no158_n04.g1 PHD_FILE: MSMg01no158_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:25 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTAAAACTCTGGGAATTTGGGGCACCTGTGAGGAATTTTTTTT
TCCTGATTTGATTATGTGAAATAGGAAGACCAACCCCAAATGTAGATCGT
TTGTTCTGTTGTAGAAACAACTCTAAAATATAAATTTCATTGATGTCAGT
TTTTTAATAAAAGTGTGTAGCTAGGACTAAATTCTAGTAGTTACAATCAA
GATAGTTTTTATGATCCTACACTGTTTCTGTCTTTTATTACAGTGTTTCC
TGAACACTGAGGTGGAGATTTGATGGTGACCTCCCTTGTAGGACTGAATG
TTAGAAGGTCCCTCAGGCTTTGCATATTATCTGGCTGGTAGATTAGAAAG
GAGATGGTTACAAGCAAAATTGGATGGATGAGCAGTTAGGCATTCCAAAG
AGCAAATGGTGCTTGACTAACCTCGTAAGCTATCTCCCTCTATTCTCTGG
GACTGGTTGTTGCTAGTCTATTTCTGTTTGTCCTTATATATCAGATTGAT
ATTTCCCAAGTGTTGTTCCTCCATGCCCAGAACCCTTATTTTTAGTCTTA
TACCTGAACAAGCTTCCTTTCATTTTCAGCTGATCTGCTCAGGTTTCAGT
ATTAGAGAGCATCTCAGCAGAGCTTGCAGCTCTATAACCCTGCCACTCCC
ACTGCTGCTGCTTTCCAACTAGCATTTC
TCGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGAATGCTTTAGCACCCCTTTTC
TTTGTTTAACTCTAATTTATCTCAGTAGTTTATATTTAAAAGCCATTTAC
TGTCAGAATATCCACTCATTTCCTACAATAGGGGGTAACTTGTATTCTGG
ATAATTCTGTATTCACTGTGCTTTTCTGAATTTCCAGTTGGTCTTTTTAC
ATCTTTGAAAACATTAAATTTAAGTACCAGAATAATCCTGCTAGGCATGA
AGAACTTGCTGCATGGTAAAATGGGTAGGAAATTATAAGTATCAATTCAG
ATAATATATACCTTTTGAGAATTACCTTCACATTTCTAATGTCCGAACAA
AATAGCTTTCTTAATTTAAGTTACAGTTGCTATGTTTCACTCAGATAATC
TATAAAGGCAAAATGAGTAGTGGTTTATAAATGAAGAAATGTCTGCATTA
AGCATGATAATATTGAAAAGAAATTACAATTTTTCACTTTGAAATTAAAT
CTCTGAAGATGATAACTTAACTTGTGTTTGGAAAAGATTTCTGTGAATTT
TTAAAAATATCATTATTAATATCAGCAGTATAAAGTTGTTCAAACAAAAT
GACTTTTATTCATTGTAAATTTAATAACGAAAATAACTGAATAGTAGGTT
TGTAGCATTTGACACAGTAATTAATATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_n04.b1 MSMg01no158_n04.b1 CHROMAT_FILE:
MSMg01no158_n04.b1 PHD_FILE: MSMg01no158_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:25 2005
         (682 letters)



>mm_chrX_122666914_122667995
          Length = 1082

 Score =  499 bits (258), Expect = e-145
 Identities = 320/342 (93%), Gaps = 5/342 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactaaaactctgggaatttggggcacctgtgaggaa---tttttttttcctga 60
           ||||||||||| ||||||| ||| |||||||||||||||||||   ||||||||||||||
Sbjct: 201 ggaattcactagaactctgagaaattggggcacctgtgaggaattttttttttttcctga 260

                                                                       
Query: 61  tttgattatgtgaaataggaagaccaaccccaaatgtagatcgtttgttctgttgtagaa 120
           ||||||||||||| |||||||| |||||||||||||||||||||||||| |||| |||||
Sbjct: 261 tttgattatgtgagataggaagtccaaccccaaatgtagatcgtttgttttgttatagaa 320

                                                                       
Query: 121 acaactctaaaatataaatttcattgatg-tcagttttttaataaaagtgtgtagctagg 179
           ||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 321 acaactctacaatataaatttcattgatgct-agttttttaataaaagtgtgtagctagg 379

                                                                       
Query: 180 actaaattctagtagttacaatcaagatagtttttatgatcctacactgtttctgtcttt 239
           ||||||||||||||||| |||||||||| |||||||||||| || |||||||||||||||
Sbjct: 380 actaaattctagtagtttcaatcaagatcgtttttatgatcttatactgtttctgtcttt 439

                                                                       
Query: 240 tattacagtgtttcctgaacactgaggtggagatttgatggtgacctcccttgtaggact 299
           |||||||||||| ||||| |||||||| ||||||||||||||||||||| |||| |||||
Sbjct: 440 tattacagtgttccctgagcactgagggggagatttgatggtgacctcctttgtgggact 499

                                                     
Query: 300 gaatgttagaaggtccctcaggctttgcatattatctggctg 341
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaatgttagaaggtccctcaggctttgcatattatctggctg 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)