BAC Information

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BAC

Clone NameMSMg01-159B13
ChromosomeX (Build37)
Map Location 122,252,691 - 122,252,991
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039828, EG434843, EG665463, EG665522, LOC100038969, LOC100038978
Downstream geneEG665579, EG665611, EG626048, LOC100040410, LOC100039903, LOC665679
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159B13.T7 (MSMg01no159_b13.b1)MSMg01-159B13.TJ (MSMg01no159_b13.g1)
ACCAG359129AG359130
length738740
length of high quality
(start - end)
687 (45 - 731)531 (74 - 604)
definitionCHROMAT_FILE: MSMg01no159_b13.b1 PHD_FILE: MSMg01no159_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:45 2005CHROMAT_FILE: MSMg01no159_b13.g1 PHD_FILE: MSMg01no159_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:45 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTGATTTTT
TGGAATTCATCTTCCTGAGTTCTTCATATATATTGTATATTAGTCTCATA
TATGATTTAGAATGGGTAAAGAACCTTTCCCAATCTATTGGTGGTCTTTT
TGTCTTATTTACGGTATCTTTTGCCTTACAGAAGCTTTGCAATTTTCTGA
GGTCCAGTTTGTGGATTCTTGATCTTACAGCACAAGCCATTGCTCTTCTG
TTCAAGAATTTTCCTCCTGTGCCTATATCTTAATGGCTTTAATCCACTTT
CTTCTCTATGAGTTTCCGTGTCTCTGGTTTTATATGGAGTTCCTTGATCC
ACTTAGACTTGAGCTCCTTTTTCTTTCTTTTCTAGATATATTGGATTTTT
TGCTAATATTCATTATAGAACAATATGTGAAATGTTCATAAAAAAAATTC
CTAAATGTTCCATAACCTTCCCAAACACTGTCTCTAGCTGAAGACCAACT
GTTTAAATATATTAGCCTACTAAAAATATTATATATTCAAATAATAGTAA
GACTGAAGCTATGGTGACAGCTAGAGGAGTAAATTACTTCTGCATAAAAT
TTTCACACTAAATGGACAACTTTGATCATAAAACAGGCACTGAGTTAACA
TGTCAGTGGTGAGAATAAATATACCACCTCCTGTTTAN
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTATTGTATTTTAGTAGATGTCAATA
TCATATGAAGTACCAGAAAATGAGTGAAAAATGACAGTGGTGAAATGTGT
TTAGAATCATTAAATTACACACTTAAAAATAAATAAATCAATGGATTTAT
TAAGTATATAAATAAAACTCCAATAAAACTTCTGAAAAGGCTTAACCAAA
TGTGATGCTTCTCATGTGAGTTGTTATTTGTCATAATTCCTGTGATTTAG
CTGTTAATAGTAGTGGGTTTTATTACTTATGAATCAGACACCAATACATC
CATGAAGGGGTATCACTCCATTCCCTCACGAGAAAGAAATGAATCAAAAG
TCATTGGATTTCTTGATGAGAATTTTTATGGTCAAAGCTGCGTTGGCAGG
AAGTTGGACAGATTGGGGTGTCTCCCAGAAAATGTAACACATATTAGAAT
TTAGGTGTTGTGAGGCTATAAGACATATTCACTACTTGTCACCTATTATT
GAGTATCCTTGCTGGTGGAGGTACTTACCCTTCACTTCTGCCATGGAGGG
AAGTGGGTCTATACCTATACAGAAGAAGGATATTGTGATGAGTAATGTTT
GCGCGCTTTTCTCTTTTTATTTCTGACCTTACTCCCTCTATTTGTTTTTA
CGTCCTATATTCTCCAAATTCTTTCTTTTCTATTCCGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_b13.b1 MSMg01no159_b13.b1 CHROMAT_FILE:
MSMg01no159_b13.b1 PHD_FILE: MSMg01no159_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:45 2005
         (687 letters)



>mm_chrX_122251938_122253024
          Length = 1087

 Score =  342 bits (177), Expect = 4e-98
 Identities = 273/305 (89%), Gaps = 7/305 (2%)
 Strand = Plus / Minus

                                                                        
Query: 383  cttttctagatatattggattttttgctaatattcattatagaacaatatgtgaaatgtt 442
            ||||| ||||||||||  |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1054 cttttttagatatattacattttttgctaatattcattgtagaacaatatgtgaaatgtt 995

                                                                        
Query: 443  cataaaaaaaattcctaaatgttccataaccttcccaaacactgtctctagctgaagacc 502
            | | ||||| |||||||||||||||||||||||| |||||| |||||||||||| |||||
Sbjct: 994  cgt-aaaaacattcctaaatgttccataaccttcacaaacattgtctctagctggagacc 936

                                                                        
Query: 503  aactgtttaaatatattagcctactaaaaatattatatattcaaataatagtaagactga 562
            ||||||||||||||||||| ||||| ||| |||| ||||||||||| ||| |||||||||
Sbjct: 935  aactgtttaaatatattagactactcaaactattttatattcaaatcataataagactga 876

                                                                        
Query: 563  agctatggtgacagctagagg-agtaaattacttctgca-taaaattttcacactaaatg 620
            ||||||||||||||||||||| | |||||| |||||| | ||||| |||||| | |||| 
Sbjct: 875  agctatggtgacagctagaggca-taaattgcttctg-agtaaaaatttcacgcaaaatt 818

                                                                        
Query: 621  gacaactttgatcataaaacaggca-ctgagttaacatgtcagtggtgagaataaatata 679
            ||||||||||| |||| |||||| | || ||||||||||||||||||| | |||||||||
Sbjct: 817  gacaactttgaccatagaacagg-agcttagttaacatgtcagtggtgggcataaatata 759

                 
Query: 680  ccacc 684
            |||||
Sbjct: 758  ccacc 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)