BAC Information

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BAC

Clone NameMSMg01-159C11
ChromosomeX (Build37)
Map Location 109,478,347 - 109,478,670
singlet/doubletsinglet
Overlap geneApool
Upstream geneRps6ka6, EG664791, D030011N01Rik, LOC100038989, Tex16, LOC622570, 4933403O08Rik, EG385407
Downstream geneSatl1, EG623341, 2010106E10Rik, Zfp711, Pof1b, LOC623412, EG623428, LOC100039112, Chm, EG664918, Dach2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159C11.T7 (MSMg01no159_c11.b1)MSMg01-159C11.TJ (MSMg01no159_c11.g1)
ACCAG359172AG359173
length745668
length of high quality
(start - end)
328 (41 - 368)237 (74 - 310)
definitionCHROMAT_FILE: MSMg01no159_c11.b1 PHD_FILE: MSMg01no159_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:49 2005CHROMAT_FILE: MSMg01no159_c11.g1 PHD_FILE: MSMg01no159_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTAGCAAAGTTGTAATAGTGTTGCATGTATTACATAAAGCTGCAATTTCT
CCTGGTACTCGAATTTAATAAAAGCCCAGGTAGTGGAAACTAAGACTGGC
AGGAGACTGACAGGTAAATAGCATGAGAGATGGAAGCTGGGATGCTTTAT
GCAGGAGTGGCTCATACCTGTCAGCTGACAGAATCCTGAAAGCTACACTT
TCCTCCTTCTGATAGAATAACTTACATTTATAAAGTGATATTAAATGCTT
CACTCCATCATACTGACCGTACTGGACCTGCACACATGAAGACATGGATT
ATAGCTATGTGGTGATTTAACACGCACAATCTCAGGAATCTAGATCCCTC
ATAAGCAAAAATGACCTTCAAACCATACACATGAGAGAGAAAAACATTTG
GGAAAACATAAGTTCAAAGCATCAACTACAATGCTTTTAAAATTATTTAG
TAAAAGTAAAACAAAATTAAAATTTCCAAACAAACCTGAGGTAGATTCTG
ATTTAATCACTGTTGCAGAGGCAAGTTCTTTTGGCAAAGACACTGAATGT
TTCAGGTCAGGCAAGCTGGCATGGATTTCATCAGACCTTCCTTCCTGTTT
ATTAAAAAGAGATATTTTCTTCAGAGGTCAATCATTTTACTAAAAGAATG
TAAACTTAGGCTATACCAAGTTCCTGTGAGTCTTTCATTGCTTCC
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCTTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAATATTGTACATAGTACTACCGGAGGATCCA
GAAAAACTTCTTTTTTGTTTTACCCCCCCCCCCCATGNNCCAAATGGGTA
AAAAAAGGCCACATGGGTCCCCCCCCCGCCCCATAAAAAAAACAAAAATT
TTTTATTTGCCCGAGAGGGNGNNNNNNNTTAACCAAAAGGATGTCCCCCT
AAAAAGGAAAATTTTTTTCTTTTTTTTNNAAAAAAATGGTGANNNCCACA
CCCTCATCATTTAGTAANNNNNNNNNAAAAAGACCCCCCATCTANNNNNN
NNNNNNNNNGNAAAAAAAAGAAATTTTTTTTAAAAAAAAATTATTTTTTA
TTAAAAACAAAAATAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_c11.b1 MSMg01no159_c11.b1 CHROMAT_FILE:
MSMg01no159_c11.b1 PHD_FILE: MSMg01no159_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:49 2005
         (328 letters)



>mm_chrX_109478143_109478870
          Length = 728

 Score =  611 bits (316), Expect = e-179
 Identities = 322/324 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctagcaaagttgtaatagtgttgcatgtattacataaagctgcaatttctcctg 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gaattcctaggaaagttgtaatagtgttgcatgtattacataaagctgcaatttctcctg 469

                                                                       
Query: 65  gtactcgaatttaataaaagcccaggtagtggaaactaagactggcaggagactgacagg 124
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 468 gtactcgaatttaataaaagcccaggtagtggaaactaagactgacaggagactgacagg 409

                                                                       
Query: 125 taaatagcatgagagatggaagctgggatgctttatgcaggagtggctcatacctgtcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 taaatagcatgagagatggaagctgggatgctttatgcaggagtggctcatacctgtcag 349

                                                                       
Query: 185 ctgacagaatcctgaaagctacactttcctccttctgatagaataacttacatttataaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctgacagaatcctgaaagctacactttcctccttctgatagaataacttacatttataaa 289

                                                                       
Query: 245 gtgatattaaatgcttcactccatcatactgaccgtactggacctgcacacatgaagaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gtgatattaaatgcttcactccatcatactgaccgtactggacctgcacacatgaagaca 229

                                   
Query: 305 tggattatagctatgtggtgattt 328
           ||||||||||||||||||||||||
Sbjct: 228 tggattatagctatgtggtgattt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)