BAC Information

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BAC

Clone NameMSMg01-159K10
ChromosomeX (Build37)
Map Location 41,466,548 - 41,577,762
singlet/doubletdoublet
Overlap genenone
Upstream geneOdz1, Gm362, LOC100039977, LOC100039987
Downstream geneLOC637141, Wdr40c, Wdr40b, LOC665585, 1110059M19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159K10.T7 (MSMg01no159_k10.b1)MSMg01-159K10.TJ (MSMg01no159_k10.g1)
ACCAG359532AG359533
length746769
length of high quality
(start - end)		319 (44 - 362)301 (76 - 376)
definitionCHROMAT_FILE: MSMg01no159_k10.b1 PHD_FILE: MSMg01no159_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:25 2005CHROMAT_FILE: MSMg01no159_k10.g1 PHD_FILE: MSMg01no159_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,466,548 - 41,466,860)(41,577,462 - 41,577,762)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTCTATTTCACTAAGTGGTCAGGACTGATAGCAGTAATGCATTCCA
TAGAGTACCAGAGAGAAATTTAAATGGCAAATTAAAAGCCAGTAGGGAGG
GACTATTTTGAGATGGTCAAGGAATACTCTCTGCAAAACTGTATTTGATG
GCACAGGTAGTGTTAGAATAAAAATGTACACATAATCTGCTTCAAATTTC
ATTTGTGGTTTGTAATAATTTAGCCTAATAATCTCAGTTATAAACCCATG
TTTTCAAATGTCTTTTCCAAATTCTTTACCCACTAATATAGAGATTTACT
TATAAGGATATTNATAGCCCCAATTTCTNTAACCTGTGATCAGGTACCAC
CATTTGGAAGTTCCCCCCACCAAAAAATATGAAAATTCTAACAGTTTTAA
AATCATGAGGACAGATGATGACAGCTCAGGGTTACCTTAAACAGATTTTG
ATAGATTTCAATTTTAATTCTTTCTGATCTATATATCTGTATTTGAAGAT
CATGTGACATTTTCTTCACATGTGAGCTCCTAAAAAGCAATAAAAAAGAT
TGTGACTGTGGCACATAAGACTAAAGTGTTTTTTAATCTTAGTAATTTTT
TTGTGGAACGATTCTATTCTTATTAATAAATTCCAATTTTGTTTTGAAAA
AAAATGTTTCCTAAATATTTATCTCATACAATTTCTATTTATTCAT

GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGATATTTAATATCAGAAAGATA
TTATAGGACTTACAAAGGAGATTCAGAAAGAAGAGTCAAATATAAGAATA
TATAATAATATATAAGTAATACTATGTAATACATAGTAATGTGTAAGAAT
ACTACATAGTAATTAATAATAAATGAAATAATAGGTCTTAGGATATAACT
TGGTAGAATGCCAATGTATCACACAGTAGTTTCTGAATTCTATCTACTGT
ACCCACTACCCTCATCTGAACTATTGGTGACAAAAAGTTTTCTAGAAGTT
GGTGGCCATTGTCTTTGTTTTTGTTCCTCTCACGAGCACACCAAATTCTA
TGAGCTGTAGAACACACACCCCCCAGGAAGACATGAATATAAGGTGTTTG
TAGGAAGGATAATGTTGACAGAGGGAGAGGAATATGAGACAGTATACTGA
TCCCACCTGCAATGTATTATGTTTTTGTATGACCATGTCCTTATAACATT
TTTTGATGCTTCCCCCCCGATTCTTTAACTTCTTAATATATTTATGGCTT
TTATTACGCACCTTTTTTTTCTTTCTCGAACACATTTGCCCACTATACTT
TCTCCAATCTGCTTATTTCCCCACGCTCGTCATTTTGTTATATTTTCTAG
TTACTTTCACTCTCCCCCCCCTTGATTTGTTGATTTTGTTTATTAATTGA
TTATTTTTATTTCTACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_k10.b1 MSMg01no159_k10.b1 CHROMAT_FILE:
MSMg01no159_k10.b1 PHD_FILE: MSMg01no159_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:25 2005
         (319 letters)



>mm_chrX_41466344_41467062
          Length = 719

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactctatttcactaagtggtcaggactgatagcagtaatgcattccatagagta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactctatttcactaagtggtcaggactgatagcagtaatgcattccatagagta 264

                                                                       
Query: 65  ccagagagaaatttaaatggcaaattaaaagccagtagggagggactattttgagatggt 124
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccagagagaaatttaaatggtaaattaaaagccagtagggagggactattttgagatggt 324

                                                                       
Query: 125 caaggaatactctctgcaaaactgtatttgatggcacaggtagtgttagaataaaaatgt 184
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 caaggaatactctctgcaaaactgtatttgatggcacaggtaatgttagaataaaaatgt 384

                                                                       
Query: 185 acacataatctgcttcaaatttcatttgtggtttgtaataatttagcctaataatctcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acacataatctgcttcaaatttcatttgtggtttgtaataatttagcctaataatctcag 444

                                                                       
Query: 245 ttataaacccatgttttcaaatgtcttttccaaattctttacccactaatatagagattt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttataaacccatgttttcaaatgtcttttccaaattctttacccactaatatagagattt 504

                        
Query: 305 acttataaggata 317
           |||||||||||||
Sbjct: 505 acttataaggata 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no159_k10.g1 MSMg01no159_k10.g1 CHROMAT_FILE:
MSMg01no159_k10.g1 PHD_FILE: MSMg01no159_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:25 2005
         (301 letters)



>mm_chrX_41577104_41577804
          Length = 701

 Score =  567 bits (293), Expect = e-166
 Identities = 299/301 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgatatttaatatcagaaagatattataggacttacaaaggagattcagaaagaagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 659 tctgatatttaatatcagaaagatattataggacttacaaaggagattcagaaggaagag 600

                                                                       
Query: 61  tcaaatataagaatatataataatatataagtaatactatgtaatacatagtaatgtgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tcaaatataagaatatataataatatataagtaatactatgtaatacatagtaatgtgta 540

                                                                       
Query: 121 agaatactacatagtaattaataataaatgaaataataggtcttaggatataacttggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agaatactacatagtaattaataataaatgaaataataggtcttaggatataacttggta 480

                                                                       
Query: 181 gaatgccaatgtatcacacagtagtttctgaattctatctactgtacccactaccctcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gaatgccaatgtatcacacagtagtttctgaattctatctactgtacccactaccctcat 420

                                                                       
Query: 241 ctgaactattggtgacaaaaagttttctagaagttggtggccattgtctttgtttttgtt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 419 ctgaactattggtgacaaaaagttttctagaagttggtggccattgtctttgcttttgtt 360

            
Query: 301 c 301
           |
Sbjct: 359 c 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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