BAC Information

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BAC

Clone NameMSMg01-159P16
ChromosomeX (Build37)
Map Location 71,122,566 - 71,122,874
singlet/doubletsinglet
Overlap geneL1cam
Upstream geneCetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4
Downstream geneAvpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159P16.T7 (MSMg01no159_p16.b1)MSMg01-159P16.TJ (MSMg01no159_p16.g1)
ACCAG359770AG359771
length741756
length of high quality
(start - end)		312 (45 - 356)287 (75 - 361)
definitionCHROMAT_FILE: MSMg01no159_p16.b1 PHD_FILE: MSMg01no159_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:48 2005CHROMAT_FILE: MSMg01no159_p16.g1 PHD_FILE: MSMg01no159_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGACTAGTGTCCCAAGCTGGCAGTGTCTTTGCCCTGTCACCTGT
TCCCATGATGGGAAAGGCTTAGGTCCCTGTATGGGGCCAACTAGAATGGG
CCCTCATTAGCCCCATCCCTTGGGTCCTATAACCTTTCCATCTGTCACTT
GCTCTAATCTGGTCATCTTTTTCTGCTTTCCCAGGCTCCTTGCACCCCCC
CTCCCTGTAACATTGTTATCTTCTTGCTGGACCATTCTCTTTCTTCCTCA
TTTGCCCATAGAAGGTGGAGATACAGCCTTCCCCTCCTGTCCTCTCCTGT
CTTCCCTCCNNCTTGCCTNTGCCGNNNACTTCCCCTTCCAGTTGGTGCCC
TTTACTCTGTCTGATTGCCAAATTTATTTTAAATGTATTTCTTTGCTCCA
CCCTGTACTTCCCCTAAGGTGTTCCCTTCTCTCAGTAACTTCTGATGGCT
CTGAGCTTGGCACAGAGTTGCTAGTCCCCATAATAGAGGTGAGCCTTATT
GTACCTCAGTTGTCTCCATGTCCCTGAATTGGGCTTAGACATTACCATAT
AGCCTTTACTGACTTGGAGGGTAGAGAGGAACATCTGATGACCACCCTGC
CTGCTTCCCAAATATCAACAGGGTCTTTGTGGCTTCCTAAAGGCTGTGGT
TGGAGAGAGAGGGAGGAGCCAGAGGAGGGTGAGAATTCTTN

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAAGTCTCTGTTTGTTTGTTTTCAA
GACAGGGTTTCTGTGTAGCCCTGCTTGTCCTGGAACTCACTCTGTAGACC
AGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTG
GGATTAAAGGCGTGTGCCACCACACCCGGCCCAAATAAATCTTTTAAAAT
GGTTAAATGTTTAGTAAGAAAGAAAAGAAAAAAAAAGAAAAGAAAAGAAA
AGAAAAGGAAAGGAAAGGAAAGGAATTGAAAGGAAAGGAAAGGAAAGGAA
AGGAAAGGATTGGAATGCATCGAAGGCAGAATCCGAAAGAAAGAAAGAAA
GAAAGAAAGATTGANNGCCCGAAAAATTGTAGTTAAAAAGAAAGGAGGGA
GGGAAGAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG
AAGGAAGGAAGGAAGGAAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAAGA
AGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAAAGAGGGGCTGATGAGAT
GGCTCAGCGGTTAAGAGCACTGACTGCTCTTCCAAAGGTCCTGAGTTCAA
ATCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_p16.b1 MSMg01no159_p16.b1 CHROMAT_FILE:
MSMg01no159_p16.b1 PHD_FILE: MSMg01no159_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:48 2005
         (312 letters)



>mm_chrX_71122362_71123074
          Length = 713

 Score =  567 bits (293), Expect = e-166
 Identities = 305/309 (98%), Gaps = 1/309 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggactagtgtcccaagctggcagtgtctttgccctgtcacctgttcccatga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattccaggactagtgtcccaagctggcagtgtctttgccctgtcacctgttcccatga 454

                                                                       
Query: 65  tgggaaaggcttaggtccctgtatggggccaactagaatgggccctcattagccccatcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tgggaaaggcttaggtccctgtatggggccaactagaatgggccctcattagccccatcc 394

                                                                       
Query: 125 cttgggtcctataacctttccatctgtcacttgctctaatctggtcatctttttctgctt 184
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cttgggtcctatcacctttccatctgtcacttgctctaatctggtcatctttttctgctt 334

                                                                       
Query: 185 tcccaggctccttgcaccccccctccc-tgtaacattgttatcttcttgctggaccattc 243
           ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||
Sbjct: 333 tcccaggctccttgcacccccccccccctgtaacattgttatcttcttgctgggccattc 274

                                                                       
Query: 244 tctttcttcctcatttgcccatagaaggtggagatacagccttcccctcctgtcctctcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tctttcttcctcatttgcccatagaaggtggagatacagccttcccctcctgtcctctcc 214

                    
Query: 304 tgtcttccc 312
           |||||||||
Sbjct: 213 tgtcttccc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 713
Length adjustment: 9
Effective length of query: 303
Effective length of database: 704
Effective search space:   213312
Effective search space used:   213312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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