Query= MSMg01no160_b24.b1 MSMg01no160_b24.b1 CHROMAT_FILE:
MSMg01no160_b24.b1 PHD_FILE: MSMg01no160_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:59 2005
(313 letters)
>mm_chrX_139093610_139094322
Length = 713
Score = 569 bits (294), Expect = e-166
Identities = 306/310 (98%)
Strand = Plus / Plus
Query: 4 ggaattcatgggtatgcttacagaacagaaaaggacactgagcaaaaacaaaagaatgat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 204 ggaattcatgggtatgcttacagaacagaaaaggacactgagcaaaaacaaaaaaatgat 263
Query: 64 agtggcctgaatctagttaaggtagggactgagaggcaggaggcctggtagattctaatg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtggcctgaatctagttaaggtagggactgagaggcaggaggcctggtagattctaatg 323
Query: 124 atgtcgtggagaaaagtcaggaatactttacacgtgcctttgttagagggtatgaagtaa 183
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgtcgtgaagaaaagtcaggaatactttacacgtgcctttgttagagggtatgaagtaa 383
Query: 184 agatgactctaaggcttcagacttagctactatgagtataaaactgtgatctgcacaaat 243
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 384 agatgattctaaggcttcagacttagctactataagtataaaactgtgatctgcacaaat 443
Query: 244 gagcaattttggagaagtgggcacttagaaattctgtttgaacaccatctttctcctgct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gagcaattttggagaagtgggcacttagaaattctgtttgaacaccatctttctcctgct 503
Query: 304 gtaacaaata 313
||||||||||
Sbjct: 504 gtaacaaata 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no160_b24.g1 MSMg01no160_b24.g1 CHROMAT_FILE:
MSMg01no160_b24.g1 PHD_FILE: MSMg01no160_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:59 2005
(287 letters)
>mm_chrX_139216326_139217012
Length = 687
Score = 489 bits (253), Expect = e-143
Identities = 274/287 (95%), Gaps = 11/287 (3%)
Strand = Plus / Minus
Query: 1 caggacagccagggctacacagagaaaccccatctcanaaaaaaaaaaaaaaaaaaaaaa 60
|||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 557 caggacagccagggctacacagagaaaccccatctc--------aaaaaaaaaaaaaaaa 506
Query: 61 agaagaagaaaaagaagaaaacactaagtaactgaaaattaaatatccggatgcttagac 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agaagaag---aagaagaaaacactaagtaactgaaaattaaatatccggatgcttagac 449
Query: 121 atcttacatttatgggttgcaagttttaatattggtaagatgcacaaacttctctaacta 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atcttacatttatgggttgcaggttttaatattggtaagatgcacaaacttctctaacta 389
Query: 181 atctatattcaatacaatctctatcaaaagctctactggctgctttgcaaaaattacatg 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atctacattcaatacaatctctatcaaaagctctactggctgctttgcaaaaattacatg 329
Query: 241 atagaacaagggtcccagaaatgccaaaaccatcttggaaaatacat 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atagaacaagggtcccagaaatgccaaaaccatcttggaaaatacat 282
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
