BAC Information

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BAC

Clone NameMSMg01-162H07
ChromosomeX (Build37)
Map Location 72,342,435 - 72,342,745
singlet/doubletsinglet
Overlap geneDkc1
Upstream geneOpn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437, EG667446, LOC669291, Gab3
Downstream geneMpp1, EG547412, 4930428E23Rik, EG667190, F8, LOC572559, LOC667218, Fundc2, Mtcp1, Brcc3, LOC667496, Vbp1, Rab39b, EG635243, Pls3, LOC635275, EG635295, LOC667537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162H07.T7 (MSMg01no162_h07.b1)MSMg01-162H07.TJ (MSMg01no162_h07.g1)
ACCAG361577AG361578
length710708
length of high quality
(start - end)
317 (50 - 366)126 (76 - 201)
definitionCHROMAT_FILE: MSMg01no162_h07.b1 PHD_FILE: MSMg01no162_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:50 2005CHROMAT_FILE: MSMg01no162_h07.g1 PHD_FILE: MSMg01no162_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGCATCCATCTGATACACAGAAAACATACCTTTAGTAACA
AGGGCCACTGAGAAGTGTCTAATTGAGCCACTTTAGATTCTGGTTTGATA
AGAAATTCTTCAGCATGTTGTATTTCCTTCAATAGAGCAGAAACATTTTC
TCAGCTTAATTTTGGAAGTGCATGCCTTTTAAACAAGAGGAAAGGAGGGG
TGTGATTTCTGAAACCCAGGTCACTCAACTTTAGGAAGATCAAGTTGAAT
CCAAATATTTTAACAAAACCATGGGTCTGCTGATGGAGTAAGGCAGAGAA
ATTCAGGGTCAATATTTTATTATTCCGCCCGCCCCGCATGTTAGAAAATT
TCTCTGGGAGTTGTATGATTTCAGGCTTTTGCACCGATCTACATAATGAC
CAGTAAGTACTAGCATATTGATTGAGAATATTTAAAAGCACTTTCCCCCT
TTAATGTGCTGTTTACTAAATTATCTCAATCAGTCGAAGCAAAGTAAATT
TCTACTCACGGCAACATCATCTTCTTGTAATGGCTTCCGGTCTTTTTTCT
TCTTATGCTTCTTTGGGAATGTAATTACTACAAGAAACAAACTCAATATT
TGAAGATTTTGAAAACTAAAACCAAAGTTTAAAATTAACTCTAAAATCGG
GACAAAGAAA
ATCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAGCCAGTAGGAATGCTTTCAGGC
TAAAAATACAGAAAATGATGGCAAATATATATATATATATATATATATAT
ATATATATATATATATATATATATATATATATATATATATATATATCTAT
ATGAGAGATACACATGGAGATATAAGTACTGATAGAAAGGTGTTTAAAAA
TAGAGTGCTTCGGTGCGAGGACGGATTATGCTTCATTAGGTGAAAGGAGG
GAGTCTAAAAGGGAGGGCGTGTGTGTTCCTGGGTTCAGGGGTCTACACAA
GTACACGAGAAATTTTTTTTTTGCCCGATGCCTGGCCCGAAAAANAGNGA
TAAGAAAAGGAGGTCGATGAGTACCCAAAGAAAAAAAAAGATAAGGTGGG
GGGGGGGGGAGGACAAGGCACCCTCCGGGTAGACGGGGCATTTCTAAGAT
GAAAACAGTTGGGGCTATGGACTCGGAGGAAGACATGCGCGTGTGGAATG
TCCGTGTAGGTGTAGAGACACGGGTCGTTGTGGGCCAGAGCGCTCGGATA
GAGTCGGTCTGAACCCTCAGCCTACGGGAAGGATAAAAGCAAAGGTTGGA
CTTAGGTTCTGACGCCATTTGGGCAAGTATGAGAAGGAGTCTCTGCTCGG
ATAACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_h07.b1 MSMg01no162_h07.b1 CHROMAT_FILE:
MSMg01no162_h07.b1 PHD_FILE: MSMg01no162_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:50 2005
         (317 letters)



>mm_chrX_72342232_72342947
          Length = 716

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%), Gaps = 1/312 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaagcatccatctgatacacagaaaacatacctttagtaacaagggccactgag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggaattcaagcatccatctgatacacagaaaacatacctttagtaacaagggccactgag 455

                                                                       
Query: 64  aagtgtctaattgagccactttagattctggtttgataagaaattcttcagcatgttgta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aagtgtctaattgagccactttagattctggtttgataagaaattcttcagcatgttgta 395

                                                                       
Query: 124 tttccttcaatagagcagaaacattttctcagcttaattttggaagtgcatgccttttaa 183
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccttcaatagagcagaaaca-tttctcagcttaattttggaagtgcatgccttttaa 336

                                                                       
Query: 184 acaagaggaaaggaggggtgtgatttctgaaacccaggtcactcaactttaggaagatca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 acaagaggaaaggaggggtgtgatttctgaaacccaggtcactcaactttaggaagatca 276

                                                                       
Query: 244 agttgaatccaaatattttaacaaaaccatgggtctgctgatggagtaaggcagagaaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 agttgaatccaaatattttaacaaaaccatgggtctgctgatggagtaaggcagagaaat 216

                       
Query: 304 tcagggtcaata 315
           ||||||||||||
Sbjct: 215 tcagggtcaata 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 716
Length adjustment: 9
Effective length of query: 308
Effective length of database: 707
Effective search space:   217756
Effective search space used:   217756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)