BAC Information

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BAC

Clone NameMSMg01-162J10
ChromosomeX (Build37)
Map Location 133,933,141 - 133,933,312
singlet/doubletsinglet
Overlap genenone
Upstream geneKir3dl2, LOC100041079, Kir3dl1, Tceal3, Tceal1, Morf4l2, BC065397, Glra4, LOC100041122, Plp1, Rab9b, 1700014N06Rik, LOC621984, LOC100034363, 4930488E11Rik, LOC666244, 2810402A17Rik, Zcchc18, BC031748, LOC666277, LOC436231, LOC666288, LOC100041260, LOC100041272, LOC669737, Esx1, EG666303
Downstream geneIl1rapl2, 1700025D03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162J10.T7 (MSMg01no162_j10.b1)MSMg01-162J10.TJ (MSMg01no162_j10.g1)
ACCAG361670AG361671
length727726
length of high quality
(start - end)
331 (39 - 369)595 (68 - 662)
definitionCHROMAT_FILE: MSMg01no162_j10.b1 PHD_FILE: MSMg01no162_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:59 2005CHROMAT_FILE: MSMg01no162_j10.g1 PHD_FILE: MSMg01no162_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
ACACACACACACACACACACACACACACACACACACCCCTCACATTTAGT
TCAATACATGAAAATGATCAGAGGACTAGGGAACAATGAGGAAAATCTTT
ACTATTATTAGTAACTTGTGGAATGTGGCCACTGTTTCCCTTGTAGCACC
CTTAAGTAGTAGCTGATTGTTTCCTCACATCTCAACAATCTCAGAGATAG
GATGTTTGCTTTGATATCTCATACCCCATTGCTATTTCTAATCATTTACT
CTTATAAACATCTATTTTCATTTATGTCATGTCACCTGACTACTCTAGCC
TCTCTCCCTCTTTCTAGAGCTGCCAACCTTTTTTTTTTCATTTATCAAAC
TTTTACCTCATCCTCCCTTACTCAAGCCCAGTCATCATTCTTGGTGACAT
CAATATATGTACAGATATATTTTTCTCAATTCAGAGCCTCTTAGTTCATT
GACCTACCCACCCCCATCTTCCTGCCTATTTCTGATCGTAAGCATCTGTC
CCTAAGATTCTTGAATCTATTTCATCTTCCTTATCATTTGCTCTAGCAAA
GTGTTCTCTGTCTGTGTAACTGCTTCTATTTTTACTTTGCATTTTCAAAT
ACATACATTATAACCTATAGAGGAATTTTAATCCAGCAACAAGGCTGCTC
TGGTAAGGGATTATATCCAAAGAGCTG
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGG
GTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGG
ATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCT
GTTGGTGGTCTTTTTGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACT
TTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAG
CCATTGCTGTTCTGTTCAGGAATCTTTCCCCTGTACCCATATCTTCAAGG
CTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTG
AAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATG
GATCGATTTGCATTCTTCTACATGATAACAACCAGTTGTGGTGGCTGGCC
TATTTCCTGATGAAAGATGATAGTGTTATCATTTATCCATTGTTCAAAGT
TTACCCTTCCTTTCTGACTTTAAGGAGAAACACGATAATATTCGCAGTAA
TAGAAAGTAGATGATCTACAGTTTGGTCAAACAATTTCTCTAGGTCTATG
ATTTTAAGTGTAGAGTGCTGAGATGGAAGACCCTGGTGATATAGTGGAAC
TGGAAGGACAATGGGAGACTATTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_j10.g1 MSMg01no162_j10.g1 CHROMAT_FILE:
MSMg01no162_j10.g1 PHD_FILE: MSMg01no162_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:59 2005
         (595 letters)



>mm_chrX_133932518_133933512
          Length = 995

 Score =  325 bits (168), Expect = 6e-93
 Identities = 171/172 (99%)
 Strand = Plus / Plus

                                                                       
Query: 424 gtggctggcctatttcctgatgaaagatgatagtgttatcatttatccattgttcaaagt 483
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 624 gtggctggcctatttcctgatgaaagatgatagtgttatcatttatccatagttcaaagt 683

                                                                       
Query: 484 ttacccttcctttctgactttaaggagaaacacgataatattcgcagtaatagaaagtag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttacccttcctttctgactttaaggagaaacacgataatattcgcagtaatagaaagtag 743

                                                               
Query: 544 atgatctacagtttggtcaaacaatttctctaggtctatgattttaagtgta 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atgatctacagtttggtcaaacaatttctctaggtctatgattttaagtgta 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)