BAC Information

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BAC

Clone NameMSMg01-162N03
ChromosomeX (Build37)
Map Location 17,758,798 - 17,759,109
singlet/doubletsinglet
Overlap geneUtx
Upstream geneEfhc2, Fundc1, EG278181, EG668994, EG436196, EG331391, Dusp21, LOC100043951
Downstream geneLOC100043952, 4930578C19Rik, LOC100043098, EG628855, LOC385333, EG628871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162N03.T7 (MSMg01no162_n03.b1)MSMg01-162N03.TJ (MSMg01no162_n03.g1)
ACCAG361827AG361828
length704715
length of high quality
(start - end)
316 (49 - 364)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no162_n03.b1 PHD_FILE: MSMg01no162_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:17 2005CHROMAT_FILE: MSMg01no162_n03.g1 PHD_FILE: MSMg01no162_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTTGAGTGGCAGTGATAAGATTTGTATATTAAAAAGTGTTT
GTTTACCATTACCTGTCTTACATTGCTGCCCATAGATTTTGGTCCTATTT
ATACTTAAATAAGGAAAGGACAGAAAATGTAGTTTTGGAAAATAATAGAC
TGTATCTTAAAATGATATGCTTTTTTTTTTCTACACTAGGCATTGACACT
TCAGTTCTGAGACCTAACCTAATTTATTGCTTGCATCCATCACTCTGCTA
TTATACAGAATTATCTGTCTTTAATTTGTATTCTCATTGCTTTGAATGAT
AAGAAATGTCTGTTTTCTTTAAACCCCGGCTTACCCGTGGGAGAAAAGTA
ATGTTAATCAGTTTAATTTTTGTTGACCCCAAACCTCCAAAAAACTGTAT
ACTTAGAGTTCACTGTGAACTAGGCAGCTAAGATAAGACATGGCCAACTC
AGGATAAGTTCACATGATAATCTTTTGATTTTCTAAATGGTATGAACAGT
GTTAGAAGTAAGATCGGCATCCCAAAGATAACCAACCACCATTCCAACTG
TAGAGTCTGGACAAAGCAAACTTGATTCTTAATCAAGAGTGACAGTTAGG
AAGTGGAGGAAGAAAGGAAAAGTCACTGCTCCAAGCTACCAAATTCCTAG
AATG
CGATGAAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTCAAGTTTTTTTTTTAAAGGAT
CAGCATAAGTATGAAGTACCTCCAGGAGCCTACCAAAGCACAAAGAATCA
AGAGAGCTGGATAGATGGCTCTGCAATTAATAGCACTGGCTGCTCTTCCA
GAGGACATAGGTCTGATTTGTAGCATTCACATGGTATCTCTAGACTTTTT
TTTTAAATTTAATTTTATTTTTTTACTTACTCACTTTTCATCCTTCTCTC
TGCCCCCTCCCAGTCACCCTCCCACAACACTTCCCCCCTCCCATGTCCCA
TCTCCTCTGATTTTTTATACACCCCCCGCTTCCCGAATCTCCCTGGAACT
TCCAGTCTCTGCAAGGCTAGGCACATCATCTCCCACTGAGGCCAGACAAG
ACAGCCCAGCTAGAAAAGCATATCCCATAGACAGGCATCAGCTTTTGGGA
TAGTCTTTGTTCCAATTGTTCAGGACCCACAAGAAGACCAAGCACATAAG
AGTGGGGAGGCCTAGATTCAGCCCCTGTATGCTTTTTGGTTGGTAGTTCA
GTCTCTGAGATCCCCCAAGAGTCCATGTTAGTTGACTCTATTGGTCTTCC
TGTGGAATTCCTACCCCATTCAGGGCTGCAATCCTTCCTCCTATTCTTCC
TTGGGTTCCCAGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_n03.b1 MSMg01no162_n03.b1 CHROMAT_FILE:
MSMg01no162_n03.b1 PHD_FILE: MSMg01no162_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:17 2005
         (316 letters)



>mm_chrX_17758594_17759309
          Length = 716

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttgagtggcagtgataagatttgtatattaaaaagtgtttgtttaccattac 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttgagtggtagtgataagatttgtatattaaaaagtgtttgtttaccattac 264

                                                                       
Query: 65  ctgtcttacattgctgcccatagattttggtcctatttatacttaaataaggaaaggaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgtcttacattgctgcccatagattttggtcctatttatacttaaataaggaaaggaca 324

                                                                       
Query: 125 gaaaatgtagttttggaaaataatagactgtatcttaaaatgatatgcttttttttttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaaatgtagttttggaaaataatagactgtatcttaaaatgatatgcttttttttttct 384

                                                                       
Query: 185 acactaggcattgacacttcagttctgagacctaacctaatttattgcttgcatccatca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acactaggcattgacacttcagttctgagacctaacctaatttattgcttgcatccatca 444

                                                                       
Query: 245 ctctgctattatacagaattatctgtctttaatttgtattctcattgctttgaatgataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctctgctattatacagaattatctgtctttaatttgtattctcattgctttgaatgataa 504

                       
Query: 305 gaaatgtctgtt 316
           ||||||||||||
Sbjct: 505 gaaatgtctgtt 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)