BAC Information

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BAC

Clone NameMSMg01-163B16
ChromosomeX (Build37)
Map Location 32,052,606 - 32,053,251
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040552, LOC100040575, LOC100040585, LOC100039362, LOC100040606, LOC100040612, LOC673784, LOC100040650, LOC100040662, LOC100039419, LOC100039429, LOC100040698, LOC630028, LOC100040722, LOC100040732, LOC100040743, LOC385298
Downstream geneLOC100039460, LOC100040781, LOC100039515, LOC100039522, LOC100039473, LOC100039550, LOC100039557, LOC100039573, EG665074, LOC100039585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163B16.T7 (MSMg01no163_b16.b1)MSMg01-163B16.TJ (MSMg01no163_b16.g1)
ACCAG362019AG362020
length729733
length of high quality
(start - end)
650 (48 - 697)646 (79 - 724)
definitionCHROMAT_FILE: MSMg01no163_b16.b1 PHD_FILE: MSMg01no163_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:37 2005CHROMAT_FILE: MSMg01no163_b16.g1 PHD_FILE: MSMg01no163_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:37 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTATCCCACCTGGTTCCTGTTAGACCTTCTGTGTTTGCATTCCT
CTGTTTTATGTAAGAATCCAGCAAACTCTTTCTACCTTGCGGGTATGTCA
CCCAACTTCCTTATTGTCTTCTGTATAAAAAGTTTGATGCTCGATTTGAC
AAATTACATTCAGATTCTACACAACCTCTCCTGTGTGCATCTGTCTGTCA
TTCATCTGACGCTTTGCCCACCCGCGCCTAGAGACCCGTTCCACGCAGAC
AAAGGCACCCAGAGGGTCTGCAGCAGGGTAACCTTTGAGAAGGTGATCAA
AAGCAGAGGAATGTAAAAGTCTTGGCTGAGCTCCACCCAGCAGACACCAC
CATTAAGTAGGCCTCCAAGTACAGTGCACATATTCATAGGCGTATTTTCA
ACATAAAAGGAGTCTGAGTTTCTCAGTTTAGCTTCTCCTGAGGCTGTAAT
GTACTGGCTAGGTAAAAACGTGTCTTGAAAGGGGCAACTTTACTAATGAA
AGCTTCCAAACTAACAATCTACAATTGCCTATGATAGATCCTGAAAAATT
ACATATAGGATTTTGGCTTAAAACCGGACTACTCAATTTCATTCCTTGAT
TTCTAAAGGCCTGAATAAATGATAATTAGCTCCCCTCATCATGTATTCAA
AAGAACCAGGTTTTTGAAAGTCTGATTGA
CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAAGTAGTAAAATCTGATGTA
GATGTGATATAAAGAGGAGGCCATGTTCCAGTGTAAGACTCTGTTGAGCC
TTAGCTTACTGGGGACTCACTGAATGAACAATGCAAAGCTGGAAATCAAT
GCAAAAAGCAAGAGAAATATATTTTTCCAACATGTTGGGGTCGCCTTGCA
CATGGAGAGAGAGAACAACCATGTGCAGCCCATCCATTTTTCCTTTATAA
AGTTCTCCAGGCAGCAGCCATTAGGCAAAATGTGATTGGTATGAAACACA
TTCGTAGATTTTGTTTCCTGGTCTAGCCTTTCCATTCTAAAGCAGTTAGA
AGCTGACACATTTAAAGTGATTTTAAGAACGGGGGAAAGGAAATGTTACT
GTAAATATCCCTGACCGTGCCCTATGACACACTAATCAGTTTGCTGTACT
GGACAAAATAGGACAGGTCATCACTATGCTTGGTTTCTAGTGATCTGTAT
CAACAATGATTTCCAATGCAATTTCTGGCCTGCATGCAGCTAGGTCAAAA
CCCATATCCAGGCCAGAAATCGCAACAGAAATCAAGGTCATCTACACATG
TGTGTTATACCATATTAAAATTGTGAATGTGAAAGAATAGTCACACATTA
AGCTGATCCAATTCTCTGTAGATTTTCGTAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_b16.b1 MSMg01no163_b16.b1 CHROMAT_FILE:
MSMg01no163_b16.b1 PHD_FILE: MSMg01no163_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:37 2005
         (650 letters)



>mm_chrX_32052402_32053451
          Length = 1050

 Score = 1110 bits (574), Expect = 0.0
 Identities = 628/646 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatcccacctggttcctgttagaccttctgtgtttgcattcctctgttttatgt 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatcccaggtggttcctgttagaccttctgtgtttgcattcctctgttttatgt 264

                                                                       
Query: 65  aagaatccagcaaactctttctaccttgcgggtatgtcacccaacttccttattgtcttc 124
           |||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 aagaatccagtaacctctttctacgttgcgggtatgtcacccaacttccttattgtcttc 324

                                                                       
Query: 125 tgtataaaaagtttgatgctcgatttgacaaattacattcagattctacacaacctctcc 184
           |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 325 tgtataaaaagtttgatgcttgatttgacaaattacattcagattctacacaatctctcc 384

                                                                       
Query: 185 tgtgtgcatctgtctgtcattcatctgacgctttgcccacccgcgcctagagacccgttc 244
           ||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 385 tgtgtgcatctttctgtcattcatctgacgctttgcccacccgtgactagagacccgttc 444

                                                                       
Query: 245 cacgcagacaaaggcacccagagggtctgcagcagggtaacctttgagaaggtgatcaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacgcagacaaaggcacccagagggtctgcagcagggtaacctttgagaaggtgatcaaa 504

                                                                       
Query: 305 agcagaggaatgtaaaagtcttggctgagctccacccagcagacaccaccattaagtagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agcagaggaatgtaaaagtcttggctgagctccacccagcagacaccaccattaagtagg 564

                                                                       
Query: 365 cctccaagtacagtgcacatattcataggcgtattttcaacataaaaggagtctgagttt 424
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 565 cctccaagtacagtgcacatattcataggagtattttcaacataaaaggagtctgagttt 624

                                                                       
Query: 425 ctcagtttagcttctcctgaggctgtaatgtactggctaggtaaaaacgtgtcttgaaag 484
           ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 625 ctcagtttagcttctcctgaggccgtaatgtactggctaggtaaaaacgtatcttggaag 684

                                                                       
Query: 485 gggcaactttactaatgaaagcttccaaactaacaatctacaattgcctatgatagatcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gggcaactttactaatgaaagcttccaaactaacaatctacaattgcctatgatagatcc 744

                                                                       
Query: 545 tgaaaaattacatataggattttggcttaaaaccggactactcaatttcattccttgatt 604
           ||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||
Sbjct: 745 tgaaaaattacatataggatttttgcttaaaactggactactcaatgtcattccttgatt 804

                                                         
Query: 605 tctaaaggcctgaataaatgataattagctcccctcatcatgtatt 650
           ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 805 tctaaaggcctgaataaatgataataagctcccctcatcatgtatt 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)