BAC Information

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BAC

Clone NameMSMg01-163D03
ChromosomeX (Build37)
Map Location 125,358,926 - 125,359,207
singlet/doubletsinglet
Overlap geneLOC100040550
Upstream geneLOC385523, LOC100040516, Mdm4-ps, EG237030, LOC100040538
Downstream geneLOC100040562, LOC100040570, LOC669120, Diap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163D03.T7 (MSMg01no163_d03.b1)MSMg01-163D03.TJ (MSMg01no163_d03.g1)
ACCAG362081AG362082
length743726
length of high quality
(start - end)
693 (49 - 741)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no163_d03.b1 PHD_FILE: MSMg01no163_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:44 2005CHROMAT_FILE: MSMg01no163_d03.g1 PHD_FILE: MSMg01no163_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCAACGATGAATACAAAGGGCTGAGAAGCACTTGAAAAAATG
TTCAACATCCTTAACCATCATGTAACTGCAAATCAAAACAACCCTGACAT
TTCACCTCACACTAGTCAGAAGGACTAGGGTCATAAATTCAGTTGACAGC
AGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTTCTCCATTGCTGGTG
TGATTGCAAGCTTATACATCCACTCTGAAAATCAGTCTGGTGGTTCCTCA
GAAAACTGGACATAGTAGTACAGGCAGTTTCAACAATACCTCTCCTGGGC
ATATATCCAGAAGAAGTTCCAACTGGTACTAAAGACACATGTTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT
GTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTATATTTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTGCTAGGTAA
ATGGATGGACCTGGAGGGCATCATGCTGAGTGAGGTAACCCAATCACAAA
GGAACTCATACAATATGTACTTACTGATAAGTGGATATTAGCCCAGAAAC
TTAGGATACCCAATATATAAGATACAATTTGCTGAACACATGAAACTCAA
GAAGAACAAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATTCCCAGCAACCACATGGTGGC
TCACAACCATCTGTAATGGGATCCAATGCCTTCTTCTGGTGTGTCTGAAG
ACAACTACAGTATAAATAAATAATAATAATTTAAAAAAAGAAATGTAAAT
TATAAAGAAAATCAAATTATAAAGAAAACCTTTATAGAAACTTAAGTATC
TGTTAATTTTCTTTTTTAAAAAAAAAAACAAGCTTCAACTGAGGCCTATA
TCCCTACTTGGTAGGACTGTTTTTAAATTCTTGGGAAAGAAAAACAAATC
AAATTGGAATATTTTTTCCCCCCCCCCCCCCCCATAATGTAAACTCATCA
AGTGACAGCAATATAATTCCATACATAAAAATTGAATGCATTTTTCATAA
GCTTAGCTAACATAAATATAATCATGTCACATACTTCATGGAAATATATT
GGTGGCCTTTGAGGGTATTAATAAGTATTTGCAATCAGCTGTGAATCTCT
ATGTAGTTCACGTTAAATTTTTTCAACTATGTGTAATCAGCAGGAGATTT
TGCAACATTAATAATTAGTTCAAGTTCAAAGAAGTATTCCTCCAATTCAC
CCTATCTTTCACTCCTTATGGAGTTCCCCTGTGGAACAAGACAGTCTTTG
GAAGTCCCCAAAAACTTAGAAAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_d03.g1 MSMg01no163_d03.g1 CHROMAT_FILE:
MSMg01no163_d03.g1 PHD_FILE: MSMg01no163_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:44 2005
         (283 letters)



>mm_chrX_125358609_125359290
          Length = 682

 Score =  509 bits (263), Expect = e-148
 Identities = 278/283 (98%), Gaps = 1/283 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcccagcaaccacatggtggctcacaaccatctgtaatgggatccaatgccttcttc 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 aattcccagcaagcacatggtggctcacaaccatctgtaatgggatccaatgccttcttc 540

                                                                       
Query: 61  tggtgtgtctgaagacaactacagtataaataaataataataatttaaaaaaagaaatgt 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 539 tggtgtgtctgaagacaactacagtataaataaataataataattttaaaaaagaaatgt 480

                                                                       
Query: 121 aaattataaagaaaatcaaattataaagaaaacctttatagaaacttaagtatctgttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aaattataaagaaaatcaaattataaagaaaacctttatagaaacttaagtatctgttaa 420

                                                                       
Query: 181 ttttcttttttaaaaaaaaaaacaagcttcaactgaggcctatatccctacttggtagga 240
           | ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgttctttttttaaaaaaaaa-caagcttcaactgaggcctatatccctacttggtagga 361

                                                      
Query: 241 ctgtttttaaattcttgggaaagaaaaacaaatcaaattggaa 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ctgtttttaaattcttgggaaagaaaaacaaatcaaattggaa 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 682
Length adjustment: 9
Effective length of query: 274
Effective length of database: 673
Effective search space:   184402
Effective search space used:   184402
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)