BAC Information

Click to search

BAC

Clone NameMSMg01-163L02
ChromosomeX (Build37)
Map Location 12,337,943 - 12,338,253
singlet/doubletsinglet
Overlap geneCrsp2
Upstream geneRpl23a-ps, LOC100043945, Bcor, 2900008C10Rik, LOC385323, LOC100043946, LOC628441, Atp6ap2, LOC668986, EG245347, 1810030O07Rik
Downstream geneLOC668987, LOC245350, Ppia-psx_132.1, Usp9x, LOC100043000, LOC100043002, LOC675380, Ddx3x, LOC385326, LOC634019, LOC668990, LOC100043947, LOC100043948, Nyx, LOC675416, Cask, Gpr34, Gpr82
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163L02.T7 (MSMg01no163_l02.b1)MSMg01-163L02.TJ (MSMg01no163_l02.g1)
ACCAG362415AG362416
length736735
length of high quality
(start - end)
311 (58 - 368)37 (202 - 238)
definitionCHROMAT_FILE: MSMg01no163_l02.b1 PHD_FILE: MSMg01no163_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:20 2005CHROMAT_FILE: MSMg01no163_l02.g1 PHD_FILE: MSMg01no163_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXACTGAACGGGATTTTCAACGAAGGGAAATGTTTTACATCTTTT
TTGACAATGTTTTAAATGAAGGTTGCAATTGTTTCTCTTAGAATGCCGGA
GGTCGATTCTGTGTAAAACAATTACATTATAAATTCTGATTCTTTCTGCA
ACATTTGAAAGCGTGTTAAGTCTTTATGGATGTAGTGAAAGTAGAATACT
TTTTTTCTAATGAGCCTCCGGGTTTCAGTCTAGTTACCTATGAAATGCCT
TGGGGCGTGATTAGGGTGTTAATACCTTCAGAGTACAAGCCGACTACACG
GATGGTTCACTATGTGAATAACACGTACTAGGAAAATTTGAAACTCTTTA
GCATCTTCTACCTGAGGTCCATAAAAGTTTTCTTTTTACCTATTGTTAGG
CTCCCTCAGGTTTCCAGGGAAATACGTTAGTATGTAGACGCTAGGATGTA
TCCTGCAATACTTTGTTACTGGAGAATTACATTGTACATGACTAAAAGAA
TTAGGGCGGGCTTCACTTACTCTTGTAAAACATTCCCTTTCAGTTTTGAT
GTACAATATTTTATTGAATGAGACAAAGCTTAACCTTATCAAAAGTGGTG
GCGGTATTACTATTCTCCTTACTATTGAGACGGGGTCTTCCTGTGTAATC
GGGCTGGTCGCTAACCTTCAGTTCTGGCTCAGCCGN
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACATTGTTTTCTACTTTTGCTAAT
TCTCATTGCCTCCTAAAACTTTGAACCAAGGTAAGGAAAGAATTTTAATT
GCTATTCCGGTTACTGAACTTGGGCATAAAAAATTTACCCTTGACTGGGA
AGAAAAGGTTAAAATTTTCCTGAACCCTTTTAAAAAATGAACAAACACTT
GGTTAAAAAATAAAGGCCTTTCTAAGGGGAGAAATTATGGTTACAGTTTT
ATTTCTTAAAACACATGAATTTGAAATTTTAATTTCCTGCCGGAATTACG
GGGCACCCCTCTTAAACTGCCCCTCACCTGCCTGGAACCTGAGCCCACCT
CTTTAAAAAGGCTCATTTCTAAACAACATTGACCATGGCACCTTTGAAAG
GAAGGGGAAGTTTGTTTTTGACAAATGTTAAATTTCCACTCAGGGAAGGA
AACCTAATTCTTTTTGCATCTTATCAAAGTTAACCCCTAGGGAAGGTGAT
GGTTTCATGAAAAGAAAGTGAACGCTGCCCTAAAGCCACACAAGGGTCCG
GCATGCTTGCCCCTCACCAAGTTTACAGGAATGGGAGTCATGCAGCTGCC
TACCCCTAAAACCGTTCCCACTCGGGCTCTGGGGTATCTGACCAAATCTG
TGGACAGCAGCAAGGGTCTAAGAATCCATTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_l02.b1 MSMg01no163_l02.b1 CHROMAT_FILE:
MSMg01no163_l02.b1 PHD_FILE: MSMg01no163_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:20 2005
         (311 letters)



>mm_chrX_12337743_12338453
          Length = 711

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgaacgggattttcaacgaagggaaatgttttacatcttttttgacaatgttttaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 actgaacgggattttcaacgaagggaaatgttttacatcttttttgacaatgttttaaat 452

                                                                       
Query: 61  gaaggttgcaattgtttctcttagaatgccggaggtcgattctgtgtaaaacaattacat 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 451 gaaggttgcaattgtttctcttaaaatgccggaggtcgattctgtgtaaaacaattacat 392

                                                                       
Query: 121 tataaattctgattctttctgcaacatttgaaagcgtgttaagtctttatggatgtagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tataaattctgattctttctgcaacatttgaaagcgtgttaagtctttatggatgtagtg 332

                                                                       
Query: 181 aaagtagaatactttttttctaatgagcctccgggtttcagtctagttacctatgaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aaagtagaatactttttttctaatgagcctccgggtttcagtctagttacctatgaaatg 272

                                                                       
Query: 241 ccttggggcgtgattagggtgttaataccttcagagtacaagccgactacacggatggtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ccttggggcgtgattagggtgttaataccttcagagtacaagccgactacacggatggtt 212

                      
Query: 301 cactatgtgaa 311
           |||||||||||
Sbjct: 211 cactatgtgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)