BAC Information

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BAC

Clone NameMSMg01-164A05
ChromosomeX (Build37)
Map Location 153,885,331 - 153,885,943
singlet/doubletsinglet
Overlap geneSms
Upstream gene4930503H13Rik, LOC640803, LOC434885, Phex, Gm1947
Downstream geneLOC100041181, EG625253, Mbtps2, LOC100040239, LOC667460, LOC667465, Smpx, Klhl34, Cnksr2, EG667483, LOC671033, LOC667487
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164A05.T7 (MSMg01no164_a05.b1)MSMg01-164A05.TJ (MSMg01no164_a05.g1)
ACCAG362635AG362636
length622738
length of high quality
(start - end)
149 (47 - 195)613 (73 - 685)
definitionCHROMAT_FILE: MSMg01no164_a05.b1 PHD_FILE: MSMg01no164_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:44 2005CHROMAT_FILE: MSMg01no164_a05.g1 PHD_FILE: MSMg01no164_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTACATAGACCAGGCTGGCCTAGGCCACCTAGAGGCTCTCAGT
CTTCTTAATGTGGTGGTGACCCTTTAATACAATTTCTCATATTGGGGTGA
CCTCTGACCATAAAGTTTTTTTCATTGTTACTTCATAACTGCAAATTTTT
TTTTTTTTGGGGGNNTTTTAACTGGCTATAAATCATGTTTAATCACAATG
TTTATCCATAATGTGATATCACAATATCTGGGTTTTCGAAAGTCTTTAGT
GACTGACCCCCTGGGAAAGGGCCCTTTGACCCTCAAAGGGATTTGATCCC
CAAATGGAAAAGGGTTGTTTTGAACCTGGGAAAAAATTTTTGGACTTTTT
TGGGGGGAGGGGCCCCCAAAAAATTTTTTGGTCCCCCCCCGGGGGAAAAA
CCAAATTTTTCCCCCCCGGGGTGGGTTTTTTAAAAAATTAAAAAAATCGG
GGGGGTTCCCCCCTTTTATATAAAAAATAGGGGGTCTCCAAAAAAAAAAC
AAAAATTTTTTTTTCCCCCCCCCTAAGTGGAGGTGGCCCCCCCCCCCCCC
TTGTGGTGTTTAAAAAAAAAAN
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACAGGACAATACAGACGCCCCAGCTGT
TCTTCATAGAGCGACAGGGCTTCAGTCAAGTTGACACAGTTCCCCTAAAT
CAGAAAGAAAAGCAAACAATGGGATTTCTAAGTCATACTCATTTGAAGGT
CTCTAATAAAGATAGAACAATTGGACCTTGAGATAAAAGTTCTTTAAAAA
TGAGATGAGGCCTCTTTACTTCCATGAATTGCAATGAATTCTATTTATGA
ACTCATTAGTTCATTCTCTTTCTACCTCATTTACGGAGCTATTTCAAATT
ATTGAAGTATGAAGCAATAGGAAGCAGCGAGGCCAATTTCTCATTAGTGA
CACAGTTCATTGTACCCACACCATGCAATTTAGCAGATTCATCCACATAA
CCCAGTCAAAGCAAACTTTTGGTCAGTAACGATCACAACCGTGTTGAAAT
AGAACTATCAAAATGATAATGTTCTTGTGCTCCATGATGATTTAAGCTAC
ATCCTAAAAGGCCACATCCTGACACAGAACTGTATCCACACCTCATCCTT
TTTCTCAAATTCTAATTTTTTAGAGTTTATTATTGTTTGTAGGCATGATA
TATGCATGTGCTATGGTACGAGTGTGGCAGTCTGGGGACAACTTTGTGGA
ATCGGTTCTCTCCTTCCGGTTTTTATGCGGCTTTTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_a05.g1 MSMg01no164_a05.g1 CHROMAT_FILE:
MSMg01no164_a05.g1 PHD_FILE: MSMg01no164_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:44 2005
         (613 letters)



>mm_chrX_153885131_153886143
          Length = 1013

 Score = 1162 bits (601), Expect = 0.0
 Identities = 610/613 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaggacaatacagacgccccagctgttcttcatagagcgacagggcttcagtcaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacaggacaatacagacgccccagctgttcttcatagagcgacagggcttcagtcaagtt 260

                                                                       
Query: 61  gacacagttcccctaaatcagaaagaaaagcaaacaatgggatttctaagtcatactcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacacagttcccctaaatcagaaagaaaagcaaacaatgggatttctaagtcatactcat 320

                                                                       
Query: 121 ttgaaggtctctaataaagatagaacaattggaccttgagataaaagttctttaaaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaaggtctctaataaagatagaacaattggaccttgagataaaagttctttaaaaatg 380

                                                                       
Query: 181 agatgaggcctctttacttccatgaattgcaatgaattctatttatgaactcattagttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatgaggcctctttacttccatgaattgcaatgaattctatttatgaactcattagttc 440

                                                                       
Query: 241 attctctttctacctcatttacggagctatttcaaattattgaagtatgaagcaatagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attctctttctacctcatttacggagctatttcaaattattgaagtatgaagcaatagga 500

                                                                       
Query: 301 agcagcgaggccaatttctcattagtgacacagttcattgtacccacaccatgcaattta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcagcgaggccaatttctcattagtgacacagttcattgtacccacaccatgcaattta 560

                                                                       
Query: 361 gcagattcatccacataacccagtcaaagcaaacttttggtcagtaacgatcacaaccgt 420
           || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcggattcatccacataacccactcaaagcaaacttttggtcagtaacgatcacaaccgt 620

                                                                       
Query: 421 gttgaaatagaactatcaaaatgataatgttcttgtgctccatgatgatttaagctacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttgaaatagaactatcaaaatgataatgttcttgtgctccatgatgatttaagctacat 680

                                                                       
Query: 481 cctaaaaggccacatcctgacacagaactgtatccacacctcatcctttttctcaaattc 540
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctaaaaggccacatcctgacacagaactgtatccacacctcatcctttttctcaaattc 740

                                                                       
Query: 541 taattttttagagtttattattgtttgtaggcatgatatatgcatgtgctatggtacgag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taattttttagagtttattattgtttgtaggcatgatatatgcatgtgctatggtacgag 800

                        
Query: 601 tgtggcagtctgg 613
           |||||||||||||
Sbjct: 801 tgtggcagtctgg 813


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)