BAC Information

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BAC

Clone NameMSMg01-164F21
ChromosomeX (Build37)
Map Location 108,566,174 - 108,740,490
singlet/doubletdoublet
Overlap geneRps6ka6, EG664791, D030011N01Rik
Upstream geneEG634340, LOC668530, LOC100043316, Pou3f4, Cylc1, LOC100042872
Downstream geneLOC100038989, Tex16, LOC622570, 4933403O08Rik, EG385407, Apool, Satl1, EG623341, 2010106E10Rik, Zfp711
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164F21.T7 (MSMg01no164_f21.b1)MSMg01-164F21.TJ (MSMg01no164_f21.g1)
ACCAG362866AG362867
length740739
length of high quality
(start - end)
321 (45 - 365)290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no164_f21.b1 PHD_FILE: MSMg01no164_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:12 2005CHROMAT_FILE: MSMg01no164_f21.g1 PHD_FILE: MSMg01no164_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,566,174 - 108,566,490)(108,740,201 - 108,740,490)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTGAAGGCACAAAAACAAAATTAAAGATATAGATGGCCTTTAAAG
TCTTTACCAGTTTAAGTTACCTGTGCTTGTATGCCTGCTCATCTGTATCA
AGTCGTAAAGTCACATGTTCTCCTTTTCCTCTACACAAACTAAAATCAGT
CTCACAGCAACTGCCATAGTTTCTATATTTTCTACCAAGAAACAATTTAA
GCAGGTATGGTGGTCCATACTAGTAGACTTAGCACACTTGAGGCTGAGGT
AGGAGTATTGTGATGCCACCATGGGCTACATAATTATGAGTTTCACTTGC
CCTGGGCTAGTATGATTTTCTAACTCACACACCACCAGGGGGCAGGGAGG
GAAGGAGGAACACACAGAACCATGAATGGCCTGAAACTCACTATATATCC
CAGACTGGTCTTAAACTCACAGAATTCTTCCTGCCTTTGTCACTCAGATA
ACAGTATAACATGTGCCATCACAAACCATATCCAGTTTATTTTCCATGTT
GGTCTTGAATATATGATCCTCCTGCATCTGTTTCCCAAGAGCTGAGATCA
TAGCCATGTATATAGCTCAACCTGTATTTTCAATCTAAACTGATTTTTCT
CTAGTGTTTCTTAAATGTTTGCCTTTTCTAATACATATTGACCAATAGAG
AAATATTGATTGTATACTTTTAATCCCAAAATGTGGAAAA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACCTTATCCTGTAAATGTCCACTCACTC
TGTTCCCTCTCTAAATGGGTCTTCGCAATTTTAATGCTAATTGATTTTTA
TTACCTTATTTATTTTCTTAGTTAAAATATGCTCTTAGGAGTTTTAAAAA
GAACTGTGCTTCTTTCAGAAGCTTCTACTTAATAGGCATTGTCATAATAG
GTCGCCTTTAGCATTGCTAATGCTTAGACCCCAGCACATTTCTAGCAAAT
AAAATCAGGTTTTATTTAGTTCAATTTAAAGAATGAATCAGCTTTGGATG
TCCTCTAAATGATTTTTTAATTACCTCCCCCACCGTGTTCAGTGTTCTGT
TCATTACTTCTTCCATTCTGACAGTAATGTAAGTTAACTCGCACTAGAGA
ATTTGGTGCAATGGAAATTCATGGGAATATTCATGACAGCAGTTGCAGTG
AATTATTTGAACCTTCCTAGAATCTTCCACAATTGATTTTATCCTGGGTT
TTGAGAATTTTAATTCCACAACTGTTGTGCAATCAATGTAGAACAAATAA
AAGATGTGATTTTTTTTATGTTGCAAATAACATTAGACCCCTTTGATGAG
GAAAAAAAACTTTAAATGGCATGTTTAGATTCATTCAATGAAAACATATG
ATTTAATAATAGTACTTACAATACATATTTTTAAGTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_f21.b1 MSMg01no164_f21.b1 CHROMAT_FILE:
MSMg01no164_f21.b1 PHD_FILE: MSMg01no164_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:12 2005
         (321 letters)



>mm_chrX_108565970_108566690
          Length = 721

 Score =  613 bits (317), Expect = e-180
 Identities = 317/317 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccctgaaggcacaaaaacaaaattaaagatatagatggcctttaaagtctttacc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccctgaaggcacaaaaacaaaattaaagatatagatggcctttaaagtctttacc 264

                                                                       
Query: 65  agtttaagttacctgtgcttgtatgcctgctcatctgtatcaagtcgtaaagtcacatgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtttaagttacctgtgcttgtatgcctgctcatctgtatcaagtcgtaaagtcacatgt 324

                                                                       
Query: 125 tctccttttcctctacacaaactaaaatcagtctcacagcaactgccatagtttctatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctccttttcctctacacaaactaaaatcagtctcacagcaactgccatagtttctatat 384

                                                                       
Query: 185 tttctaccaagaaacaatttaagcaggtatggtggtccatactagtagacttagcacact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttctaccaagaaacaatttaagcaggtatggtggtccatactagtagacttagcacact 444

                                                                       
Query: 245 tgaggctgaggtaggagtattgtgatgccaccatgggctacataattatgagtttcactt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgaggctgaggtaggagtattgtgatgccaccatgggctacataattatgagtttcactt 504

                            
Query: 305 gccctgggctagtatga 321
           |||||||||||||||||
Sbjct: 505 gccctgggctagtatga 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no164_f21.g1 MSMg01no164_f21.g1 CHROMAT_FILE:
MSMg01no164_f21.g1 PHD_FILE: MSMg01no164_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:12 2005
         (290 letters)



>mm_chrX_108740001_108740690
          Length = 690

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accttatcctgtaaatgtccactcactctgttccctctctaaatgggtcttcgcaatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 accttatcctgtaaatgtccactcactctgttccctctctaaatgggtcttcgcaatttt 431

                                                                       
Query: 61  aatgctaattgatttttattaccttatttattttcttagttaaaatatgctcttaggagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aatgctaattgatttttattaccttatttattttcttagttaaaatatgctcttaggagt 371

                                                                       
Query: 121 tttaaaaagaactgtgcttctttcagaagcttctacttaataggcattgtcataataggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 370 tttaaaaagaactgtgcttctttcagaagcttctacttaataggcattgtcataaaaggt 311

                                                                       
Query: 181 cgcctttagcattgctaatgcttagaccccagcacatttctagcaaataaaatcaggttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cgcctttagcattgctaatgcttagaccccagcacatttctagcaaataaaatcaggttt 251

                                                             
Query: 241 tatttagttcaatttaaagaatgaatcagctttggatgtcctctaaatga 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tatttagttcaatttaaagaatgaatcagctttggatgtcctctaaatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)