ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACTGGATCGCCTCGTCTACATTACACTTTCCACAGTAGAAAATGAC
GGCAGCTCCATTTGAGGGGTCTGCAGAAGGATGGCTAAATATATCTTCAT
CCTAGGAATGTGAGTGAAATATCATTGATCTTACACATTCCTTAGCTGGC
TTGCCATCATAGTGAAGCAGAACAAGGAGAGGAAATCACAATGCTGATAA
CTCCTGGAATTTTGTAAAAACCACCAGTATTAGGGCGTGCGGTTGGAAAG
TTCTTGTTTGAAAGTGAAATTCACTATCCTAAAAATACAGCTGGAAGGGG
CTGATTTTTGTAGTAAATATTTAAAAAGTGTTCTCAGGGTGAAATGGGAT
GGGATAGGATGGGGTCTCTACTCTGATTTGCAAGAGTTGCAACTTCTATG
CTTAAAATCATCTGACCATGACACACTGAAAGCTATTGCTACCAGGGCAC
TCAGTGTAGTGTGGGGGTAAGATGGACATATTTGGTGTTCCTGTGTGTTG
GCAAGTGTATCCCCAGGAAGAGTTATTTTGTCCTGTATGTCTCTCTTATT
TGGGACAGTGCATAAAAGACTAATTTGTTCAAAAAGAAACAAACAGCAAC
AAAAAGACACCATCAGCTTATCAAAAAGTTGATTCTGCGGAATCCCTGAC
AAGTCAGCCTA

ATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTAGAAGCTATATAACTAAGATAA
TTGGAAGAAGTTTCTAGTTTAGACTAGAATGGTAGGGGTAGAATTGGTGA
TAATTTGAATATTGAAATTATGCTGAAGCTTGATATGACAATTTTTATTA
ACAAACAGTGGGTTCAGCAAAACTCCAAAGTGAAGGATGACTTTAAGTTT
CTTACTTGATCCAGGGAAAGAATGAAGTTGTTGTCAAATGAAGAAGAAAC
ATAGTTTTAAAAAAAGGATTAGGAAATATTTGTAGTTTTGCTTGTTTGTT
TCAGGGAAAGTGTAAGTATAATTCTTATTAGATACCCAATTGTACATATT
AATACACAGGTTCATGGCGAGCCCTGATCTTTGTGGAAAGGCTTGGGAAA
AAGATATTGTCTTAGTCACTGTTATATTGCTCTGAAGACATCATGAGCAC
TGCAACTCTTAAAAAAGAAAGAATTCAATTGAGGCTTGCATACACTTGCA
AAGGTGTATTATCATGTCTGGGAGCATGGCACCAAAGTGTTGGTGAAATT
AAGAGTTTTATACCTGGATCCACAAACAGAAGGAAAAGAGAAGCGCTGGG
CCTGGCTTGGGCCCTTGAAACCTTAAAACTCACCCTTGGTGACTTCCTCC
AACTAGCCACACN

Query= MSMg01no165_j10.b1 MSMg01no165_j10.b1 CHROMAT_FILE:
MSMg01no165_j10.b1 PHD_FILE: MSMg01no165_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:48 2005
         (599 letters)



>mm_chrX_47154883_47155881
          Length = 999

 Score = 1145 bits (592), Expect = 0.0
 Identities = 595/596 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcactggatcgcctcgtctacattacactttccacagtagaaaatgacggcag 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ggaattctcactggatggcctcgtctacattacactttccacagtagaaaatgacggcag 740

                                                                       
Query: 64  ctccatttgaggggtctgcagaaggatggctaaatatatcttcatcctaggaatgtgagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ctccatttgaggggtctgcagaaggatggctaaatatatcttcatcctaggaatgtgagt 680

                                                                       
Query: 124 gaaatatcattgatcttacacattccttagctggcttgccatcatagtgaagcagaacaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaaatatcattgatcttacacattccttagctggcttgccatcatagtgaagcagaacaa 620

                                                                       
Query: 184 ggagaggaaatcacaatgctgataactcctggaattttgtaaaaaccaccagtattaggg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ggagaggaaatcacaatgctgataactcctggaattttgtaaaaaccaccagtattaggg 560

                                                                       
Query: 244 cgtgcggttggaaagttcttgtttgaaagtgaaattcactatcctaaaaatacagctgga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cgtgcggttggaaagttcttgtttgaaagtgaaattcactatcctaaaaatacagctgga 500

                                                                       
Query: 304 aggggctgatttttgtagtaaatatttaaaaagtgttctcagggtgaaatgggatgggat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aggggctgatttttgtagtaaatatttaaaaagtgttctcagggtgaaatgggatgggat 440

                                                                       
Query: 364 aggatggggtctctactctgatttgcaagagttgcaacttctatgcttaaaatcatctga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aggatggggtctctactctgatttgcaagagttgcaacttctatgcttaaaatcatctga 380

                                                                       
Query: 424 ccatgacacactgaaagctattgctaccagggcactcagtgtagtgtgggggtaagatgg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ccatgacacactgaaagctattgctaccagggcactcagtgtagtgtgggggtaagatgg 320

                                                                       
Query: 484 acatatttggtgttcctgtgtgttggcaagtgtatccccaggaagagttattttgtcctg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 acatatttggtgttcctgtgtgttggcaagtgtatccccaggaagagttattttgtcctg 260

                                                                   
Query: 544 tatgtctctcttatttgggacagtgcataaaagactaatttgttcaaaaagaaaca 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tatgtctctcttatttgggacagtgcataaaagactaatttgttcaaaaagaaaca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)