BAC Information

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BAC

Clone NameMSMg01-167D05
ChromosomeX (Build37)
Map Location 4,255,747 - 4,256,496
singlet/doubletsinglet
Overlap geneLOC100043933
Upstream geneLOC673743, OTTMUSG00000016405, OTTMUSG00000016411, LOC668961, LOC100042159, LOC100042168, LOC627187, LOC100042185, OTTMUSG00000016407, OTTMUSG00000016437, OTTMUSG00000016420, LOC547057, EG546327, EG668965, LOC546185
Downstream geneLOC670673, LOC100042254, LOC100043934, LOC100042267, LOC100042275, LOC668967, LOC434724, LOC100043935, LOC668968, LOC546182, Mycs, LOC668969, LOC668970, OTTMUSG00000016453
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167D05.T7 (MSMg01no167_d05.b1)MSMg01-167D05.TJ (MSMg01no167_d05.g1)
ACCAG364776AG364777
length741743
length of high quality
(start - end)		697 (45 - 741)662 (78 - 739)
definitionCHROMAT_FILE: MSMg01no167_d05.b1 PHD_FILE: MSMg01no167_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:54 2005CHROMAT_FILE: MSMg01no167_d05.g1 PHD_FILE: MSMg01no167_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:54 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAAACCTGCAGAGAGCAGAGTGAGAAATTGTTCAGGAGAATGCAG
GTTCTCTCAGAGGGAAACAAAGTGCTATGAATATGTGAGTGCAGCTTTGC
ACAGAGGCCATTGTGCCTGTGAGTTCATGTTCCTGCTGAGGACAGATTGC
AATGGAGACAAAAGTGTAGGTGCCTGCTGATGTCTCGAGTTGAGGATTAA
CCTGTTAGTGCAGGTGACTGCAGGGGCCAGGGAAGGGACCTGGGCAAATA
AGTGCAGGAGCCTTCAGAAGACTAGGTTATGTGGGGACAGTGGGCTATAC
ACAGACAAGCTGGTCTCCAGTTGAGTTGAGGTCTGAACTCTAGTAGAACC
TGATGGGTGGCAATTCCCACCTACATGGGACAGAAGGTGTTCCCTCATGT
CTTCTGGCCCCCTGGCTCCTGTTGAATTTACCCCACATACCCCACAAGAG
AGGATAGTGGCTAGCAGTCATGTACACAATGTCCCAAGCTTCTGACCTTC
AGGCTAGACTTCTCCCAGTTACCTAGCAACAACAAGATAACAAGTCCACT
ATAAGAGGGGCTGCTTGGCCCACTCCTCACTCTTTTAAGCTTTTACTTTC
TTTAGTCTCTCTCTAAGCCCTCTCTCTCTAAGCCTTCACTTTTCTTACTC
TCTAACTCTCTTTCTCTCTTTCCTTTCCTCCTTCTCTCCTG

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATTCTATTGGACACCAGACA
ACAGCTTTGCCACTCTCTAGTACTTCTTCACAGGGGCCCTAGGGAACCGC
AGAGACAGCACCACACAACCAGGTGCCAGGGCAGGTTTCAAGCTTCATCC
TCAGGTTCTTGGCAACAGCAGTTAGGAACCAGCAAAAAGCATGGAGGCAC
TCACTGGGAAAAGTTCATCATTTACCCCCATAGTCAAGTGTATCTCCCCC
TTTCACACTGCAGCCTTGGAGGCCTCCAGGACCCAGGAAGCAGAAGGGCA
GGAAAGCTGCATAACAGGACATGGAAAGTTCTAAACTGACCAAGAAAAGA
GCTGGTCGGAAGAGGCACAGGAGCAGATCTCTAGCCCTGCCCCAAAGGAA
CATTGTGGGCTGCAGAATTTCTCATGAGAGGAAAGAAGGAGATGAGCCTA
TCACACAGTGGAAAGGGACTGTGCTGGATCAGGTGCCTATAAACCCCTCC
CTGTACCTGGAGAAATATGATGGGATTGACTGCATGTATGGGCTGGAATT
TCACACAGATAAGAGGGTATTGTCCCTAAAGGTTCTTTCTGACAAAGTGG
CATCATCTCGAGTCACTGATGCCAGCCTTGCTGATGTCATAATTGGCAAA
GCAGTTAATCATCTATTTGAGGGTGAGCATGGCTCTAAGGACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_d05.b1 MSMg01no167_d05.b1 CHROMAT_FILE:
MSMg01no167_d05.b1 PHD_FILE: MSMg01no167_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:54 2005
         (697 letters)



>mm_chrX_4255543_4256639
          Length = 1097

 Score = 1110 bits (574), Expect = 0.0
 Identities = 679/750 (90%), Gaps = 57/750 (7%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaaacctgcagagagcagagtgagaaattgttcaggagaatgcaggttctctc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaaacctgaagagagcagagtgagaaattgttcaggagaatgcaggttctctc 264

                                                                       
Query: 65  agagggaaacaaagtgctatgaatatgtgagtgcagctttgcacagaggccattgtgcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agagggaaacaaagtgctatgaatatgtgagtgcagctttgcacagaggccattgtgcct 324

                                                                       
Query: 125 gtgagttcatgttcctgctgaggacagattgcaatggagacaaaagtgtaggtgcctgct 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 gtgagttcatgttcctgctgaggacagattgcaatggagaaaaaagtgtaggtgcctgct 384

                                                                       
Query: 185 gatgtctcgagttgaggattaacctgttagtgcaggtgactgcaggggccagggaaggga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gatgtctcgagttgaggattaacctgttagtgcaggtgactgcaggggccagggaaggga 444

                                                                       
Query: 245 cctgggcaaataagtgcaggagccttcagaagactaggttatgtggggacagtgggctat 304
           ||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| 
Sbjct: 445 cctgggcaaataagtgcagtagccttcagaagacttggttatgtggggacattgggctaa 504

                                                                       
Query: 305 acacagacaagctggtctccagttgagttgaggtctgaactctagtagaacctgatgggt 364
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acacagacaagttggtctccagttgagttgaggtctgaactctagtagaacctgatgggt 564

                                                                       
Query: 365 ggcaattcccacctacatgggacagaaggtgttccctcatgtcttctggccccctggctc 424
           || |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 565 ggaaattcccacctacatgggacagaaggcgttcccttatgtcttctggccccctggctc 624

                                                                       
Query: 425 ctgttgaatttacc----ccacataccccacaagagaggatagtggctagcagtcatgta 480
           |||||||| |||||    |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgttgaagttaccacccccacattccccacaagagaggatagtggctagcagtcatgta 684

                                                                       
Query: 481 cacaatgtcccaagcttctgaccttcaggctagacttctcccagttacctagcaacaaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cacaatgtcccaagcttctgaccttcaggctagacttctcccagttacctagcaacaaca 744

                                                                       
Query: 541 agataacaagtccactataagaggggctgcttggcccactcctcactct----------- 589
           |||||||||||||||||||||||||||||||||||||||||||||||||           
Sbjct: 745 agataacaagtccactataagaggggctgcttggcccactcctcactctcttaagctttt 804

                                                                       
Query: 590 ----------------------------------------tttaagcttttactttcttt 609
                                                   ||||||||||||||||||||
Sbjct: 805 actttctttactctccctcttactctctctctcttactcttttaagcttttactttcttt 864

                                                                       
Query: 610 agtctctctctaagccctctctctct--aagccttcacttttcttactctctaactctct 667
           ||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||
Sbjct: 865 agtctctctctaagccctctctctctctaagccttcacttttcttacactctaactctct 924

                                         
Query: 668 ttctctctttcctttcctccttctctcctg 697
           ||||||||||||||||| ||||||||||||
Sbjct: 925 ttctctctttcctttcccccttctctcctg 954


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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