BAC Information

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BAC

Clone NameMSMg01-168B15
ChromosomeX (Build37)
Map Location 37,949,740 - 37,950,036
singlet/doubletsinglet
Overlap genenone
Upstream geneEG636756, EG636766, EG245391, LOC100039769
Downstream geneLOC385344, Gria3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168B15.T7 (MSMg01no168_b15.b1)MSMg01-168B15.TJ (MSMg01no168_b15.g1)
ACCAG365392AG365393
length700708
length of high quality
(start - end)
316 (45 - 360)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no168_b15.b1 PHD_FILE: MSMg01no168_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:05 2005CHROMAT_FILE: MSMg01no168_b15.g1 PHD_FILE: MSMg01no168_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATTTCACTTTATCATACAAGAATTCTGTGTCAAATGATAGACTCC
ATTGATTAACTTCCCACAGAACCTTGCTGAAAATTAATATGTAGTCACCT
ACAGGCTTATCTATAAAGAATGTTATGATCAATAGCCTGACATGGATTGA
CAAGTGGGTAGTATTGTACCCAATTATATACTTGTAGTATATAATTTATT
CTCTTACAACATTGATGAATACAACATTGATGTCTGCAAAGTTCTCTTAT
TAAAAGAATTTTAAAACATTTATATATTCTCAATATGTACATACAAAGTT
ATAAATGTTTTTTTTTAACCCCTTNTCANTCAAGAGATTTACCTTTCAGC
TTCCATCTTTTAAAACTCATGACTGAGAAGAATTATTGGTGACAGAGAAC
TTGATTATCATATGGGAGGAATACGGTTCTAAAATAAGCAGTGTCAAAAT
GCAACTAAAGTAAGATTTAAGAAAAATAAAGCTACATTTTATTAGGAGGC
TGAATTATTTTTTCTTATTTTTCAACTCTTTTTACAATGGTTCCTGATGA
TCATGGCATTAAAGCCCATGTCCTCGGGCATTCTAGCCACACATTCTGCT
GCTGGACCACATTCCCAGCCTTATGGTTACTTTACCTTTTGAGACTGCTN

CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGGCCTTTAGGCCCAGGCTTGGG
AATGTGGCCTTTGTAAAGGTATGCTAATCATAAAACAGACATTCCTCCAC
CCACCGGCTTCCTGGGTTCAAAGAGTGCTCATTCAAAGAAAGTCACCCAG
AACCTGCAATGCAAATGTGCTATTGTTAGGGGCTCTTAGAAGCTGTCTTG
AGAGTTAACACTTACCAGGTATTCCTTGTGACTCTTGTAACTTTGCACTT
CCTTGTGACTCTTAACTGGTATTTTTGGTATTTTCCAACAACACCCTTCC
CACCTCCTTATTTTGNGTTTCCTTNCCTTACCCACCCCCTAATCCAGCTA
CTCGGGGCGCCAAGGTCCTCTACCCAAGAAAAATGTATGACCTTGGGCCG
GAGAGTGCTCTTGAATAAAAATCCTCTTGCAATTTGCAACAAGACCATTT
CTCCTTGGTGATTTTGGGGTGTCACCTCTCCTGAGTCAGAACGTGGGGGA
GTCCTCAGGTTGTGGGTCTTTCAGGCTAAAATGTCTGAAAGAATCCATTT
TTAAATATTACAACCCCCCCACCCTTATAATTATTGAGCGACAGTTGCTG
TTAATTTTATTATTCGAACAACATTACATAGCTCGCATTCATTATATTTT
CCCACTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_b15.b1 MSMg01no168_b15.b1 CHROMAT_FILE:
MSMg01no168_b15.b1 PHD_FILE: MSMg01no168_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:05 2005
         (316 letters)



>mm_chrX_37949537_37950252
          Length = 716

 Score =  511 bits (264), Expect = e-149
 Identities = 293/310 (94%), Gaps = 13/310 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctatttcactttatcatacaagaattctgtgtcaaatgatagactccattgatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctatttcactttatcatacaagaattctgtgtcaaatgatagactccattgatt 263

                                                                       
Query: 64  aacttcccacagaaccttgctgaaaattaatatgtagtcacctacaggcttatctataaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aacttcccacagaaccttgctgaaaattaatatgtagtcacctacaggcttatctataaa 323

                                                                       
Query: 124 gaatgttatgatcaatagcctgacatggattgacaagtgggtagtattgtacccaattat 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| 
Sbjct: 324 gaatgttatgatcaatagcctgacatggattgacaagtgggtagtattgtacc---tta- 379

                                                                       
Query: 184 atacttgtagtatataatttattctcttacaacattgatgaatacaacattgatgtctgc 243
                    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ---------gtatataatttattctcttacaacattgatgaatacaacattgatgtctgc 430

                                                                       
Query: 244 aaagttctcttattaaaagaattttaaaacatttatatattctcaatatgtacatacaaa 303
           |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 431 aaagttctcttattaaaagaattttaaaacaaaaatatattctcaatatgtacatacaaa 490

                     
Query: 304 gttataaatg 313
           |||| |||||
Sbjct: 491 gttaaaaatg 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)