BAC Information

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BAC

Clone NameMSMg01-168P09
ChromosomeX (Build37)
Map Location 101,574,705 - 101,575,014
singlet/doubletsinglet
Overlap genenone
Upstream geneChic1, Tsx, Tsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2, EG621381, EG668426, LOC668430, Rnf12, C77370, Vcp-ps
Downstream geneEG621542, Uprt, Zdhhc15, Magee2, LOC622098, LOC676331, 5530601H04Rik, 2610029G23Rik, Magee1, LOC622159, LOC668454, E530001F21Rik, LOC622202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168P09.T7 (MSMg01no168_p09.b1)MSMg01-168P09.TJ (MSMg01no168_p09.g1)
ACCAG365982AG365983
length712726
length of high quality
(start - end)
312 (43 - 354)184 (77 - 260)
definitionCHROMAT_FILE: MSMg01no168_p09.b1 PHD_FILE: MSMg01no168_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:32 2005CHROMAT_FILE: MSMg01no168_p09.g1 PHD_FILE: MSMg01no168_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGATAAAATTTATGAATTAAAATTCTGGGGTTCATTAGGGCTAATG
GGCTTGAGGGGACCAAATCATCCTGACCTTTCATATTATTTGTATTTCTG
TGACATGAGCTGGGCCTGCAGATTCCTTCCTTTGGTAGTGTATCTGAAGT
GAGGTTCTAGCCTTCTGCATATTGGGACAGTGCAGGAGGTAGGCCAGGAG
CAGCCAGTGCTTGAAGTGCTGAATTAAGAGCTAGGCTTAGGAGTATAGAG
ATGGCCTTAGGTCTAGTGAGGAACATGGGAGCTTAGTAGGCAGTGGTGGT
CATTTTTTACCTTCATCCCCCCCTCTGAAGCAATGTCTCTCAATGAATCT
GGAGCTCACTCACTTTAATAGACTGCTGTCCATCAAGCTCCAAGGATCAG
CTTGTCTCCCTGCCTTATTCTGGGGTTGCAGATATGGACCCTTACTTACA
CTGCACTTTTATTTGGACACTGGAGATACAAACTCATTCACAGCTGTGTA
CGCAACATTTTCTTACTGAATCTACGCAGCCACCAAGTATGTTGCTTTCT
CTGTGTACCATACACTTATGCCCATATGTGTGCTCATCCCCCTCTTTATA
ACACTATACCTTTCCCTTATTTTCTCTCTTTTCCATCTCTTATTTCATCT
CTTCCACACTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGNGAGAAAGAGG
AACACTCCNCTCCATGTGTGGGGGANTTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCTGAAAATTGGACATAGTACTACCGGAGG
ATCCAGCAATACTTTTTTTGGCCCCCCCCCCCCCCCAGATGCCCCAATTG
GTAAGAAGGACACATGCTCCACTACGTTCATAAAAAATANTATTTATTAT
AGCCGGAAGCTGGAAAGAAACCCAAATGCCTTCCCACAGAAGAGCNTATT
CCGAAAAAGGACTTCAGNGAGNNNNTAGGACTTCACACATTTCNCNTTCT
TCAAAACAAAGCATTTTTTTGGAAAATCCCCTACCCCCCAAGGGGATGGA
TCCTGGGTGGGGTTTCCTTCCCCGCAATGAGAAGATTNTTCCAAACCACC
ACCCGCGGGAATCTCCCTCCCATAACCAGGGGCGCCTCCCCTTTACCGCC
TCTAGGTTTATATTTAACTCCCCTNT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_p09.b1 MSMg01no168_p09.b1 CHROMAT_FILE:
MSMg01no168_p09.b1 PHD_FILE: MSMg01no168_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:32 2005
         (312 letters)



>mm_chrX_101574501_101575215
          Length = 715

 Score =  561 bits (290), Expect = e-164
 Identities = 304/310 (98%), Gaps = 3/310 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgataaaatttatgaatt---aaaattctggggttcattagggctaatgggc 61
           ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||
Sbjct: 514 gaattctttgataaaatttatgaattaaaaaaattctggggttcattagggctaatgggc 455

                                                                       
Query: 62  ttgaggggaccaaatcatcctgacctttcatattatttgtatttctgtgacatgagctgg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ttgaggggaccaaatcatcctgacctttcatattatttgtatttctgtgacatgagctgg 395

                                                                       
Query: 122 gcctgcagattccttcctttggtagtgtatctgaagtgaggttctagccttctgcatatt 181
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gcctgcagattccttcctttagtagtgtatctgaagtgaggttctagccttctgcatatt 335

                                                                       
Query: 182 gggacagtgcaggaggtaggccaggagcagccagtgcttgaagtgctgaattaagagcta 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 334 gggacagtgcaggaggtaggccaggagcagccagtgcttgaagtgctgaattaagagtta 275

                                                                       
Query: 242 ggcttaggagtatagagatggccttaggtctagtgaggaacatgggagcttagtaggcag 301
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 274 ggcttaggagtatagagatggccttagggctagtgaggaacatgggagcttagtaggcag 215

                     
Query: 302 tggtggtcat 311
           ||||||||||
Sbjct: 214 tggtggtcat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 715
Length adjustment: 9
Effective length of query: 303
Effective length of database: 706
Effective search space:   213918
Effective search space used:   213918
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)