BAC Information

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BAC

Clone NameMSMg01-168P18
ChromosomeX (Build37)
Map Location 98,788,936 - 98,789,212
singlet/doubletsinglet
Overlap geneTaf1
Upstream geneP2ry4, Arr3, Pdzd11, Kif4, Gdpd2, Dlg3, Tex11, LOC668271, LOC100042392, Slc7a3, Snx12, Mllt7, Gm614, Il2rg, Med12, Nlgn3, LOC100042407, Gjb1, Zmym3, Nono, Itgb1bp2, LOC620837
Downstream geneOgt, LOC620865, LOC668291, Cxcr3, LOC632454, LOC668302, EG212753, 8030474K03Rik, LOC668308, LOC100042465, H3f3a-ps1, EG621083, Rgag4, LOC100042480, LOC331476, Pin4, LOC670921, Ercc6l, LOC668318, Rps4x, LOC100043080, Cited1, Hdac8, Phka1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168P18.T7 (MSMg01no168_p18.b1)MSMg01-168P18.TJ (MSMg01no168_p18.g1)
ACCAG365999AG366000
length778721
length of high quality
(start - end)
305 (48 - 352)281 (75 - 355)
definitionCHROMAT_FILE: MSMg01no168_p18.b1 PHD_FILE: MSMg01no168_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:34 2005CHROMAT_FILE: MSMg01no168_p18.g1 PHD_FILE: MSMg01no168_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
TTTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGT
TCTGTTCAGGAATTTTTTTTTTGTGCCCATATCTTCAAGGCTTTTCCCCA
CTTTCGCCTGGAATTCCAANAGCGATACCGGTTTTATGTGAAGTTANTTG
ATCCANTTAGATTCGACCATAAAAAAAAAAAATAAGGGTGGGGGGGTGCG
CATTCTTCTATATGATATTTTTTATTTGTGCCTGCACCAATTGTTGAGTA
TGCTGCCTTTCTTCCTCTGGTCCGGTTTCAGCTTCTTCGCCTATATATTT
TGTTTCCTTATTTCGTTTCTTTTTCTTTTTTCTTATGACCTTCTTTACAT
TTATTTCATTCGTCTCCACTTTTATACAGCCTTTTTTCGTTTTTTAACTC
TTTACCCTCACCTTTTTTCTTCTCCCTCCTCATCCTTTTTTTTTTCTTTT
TTCACTTCCCCCGCTTTTTCCACCCTCTTTCCTCTTTTTTTTTTTCTTCC
CCTATTTATTATCCCACTATTTTTTTTT
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCTTTATAACAAAAGGACATGCAAA
ACAACCTAGTTAAAGAGAAACCACAGCCCGGTACAGCTTTTTACACAAAT
TTTTAGAATCCTTTAAATAGCATTCACTCTAGCAGACTGGCATCTATTGT
ATATGTTTAAAAACTAAAGTAGAAATGCATAAAGCTTAGGGACAAGTTTA
TGTATTAACATAACAGCCTCTCTGGTCAGTAAACTACTTTATTTTTCTAC
GTCTTGCCTTGCTGTTTTTAAGCTCAGGGATTCATATTAGTTATAGTTTT
ATTGTCNTTAGTTTACCTGAAACCAAGCCGGATAATGGAATTAATTTCAT
AAAGAGCATGGGATGCCCCGACAAAAAATAAGTCTGTGGGGGAGGCTTCA
AAGCAAAATGGCATGGTCAGAATAAAAAGCATGGGCTTTGGAGTAAACAG
CCCTGGGATTGAGCCTTGGTTCTACCGTTGTTAACCACCCTGTTTTCCTC
AACTGTTAAACATGGATGATAATATCTACGCTCCGCGGTTGTTGCGATAA
CTACCATCTATGTGTATCCTATTTTATGTCTCTTCAGCTCATTGACTTTT
TCATTTCCCTCCAGACCAGAGCATAATTTAATTATTTGTTTTCTTGGTCA
GTATTTCTTACAAATAAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_p18.g1 MSMg01no168_p18.g1 CHROMAT_FILE:
MSMg01no168_p18.g1 PHD_FILE: MSMg01no168_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:34 2005
         (281 letters)



>mm_chrX_98788736_98789416
          Length = 681

 Score =  528 bits (273), Expect = e-154
 Identities = 276/277 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctttataacaaaaggacatgcaaaacaacctagttaaagagaaaccacagcccggtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tcctttataacaaaaggacatgcaaaacaacctagttaaagagaaaccacagcccggtac 418

                                                                       
Query: 61  agctttttacacaaatttttagaatcctttaaatagcattcactctagcagactggcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 agctttttacacaaatttttagaatcctttaaatagcattcactctagcagactggcatc 358

                                                                       
Query: 121 tattgtatatgtttaaaaactaaagtagaaatgcataaagcttagggacaagtttatgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tattgtatatgtttaaaaactaaagtagaaatgcataaagcttagggacaagtttatgta 298

                                                                       
Query: 181 ttaacataacagcctctctggtcagtaaactactttatttttctacgtcttgccttgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 297 ttaacataacagcctctctggtcagtaaactactttatttttctaagtcttgccttgctg 238

                                                
Query: 241 tttttaagctcagggattcatattagttatagtttta 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 tttttaagctcagggattcatattagttatagtttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)