BAC Information

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BAC

Clone NameMSMg01-169B16
ChromosomeX (Build37)
Map Location 11,414,847 - 11,415,150
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668982, Ppia-psx_105.1, LOC100042922, LOC100042927, LOC100042929, LOC100042931, OTTMUSG00000016790, LOC100042939, LOC100042943, LOC100042944, LOC100042946, EG236663, 8430439B09Rik, LOC669520
Downstream geneRpl23a-ps, LOC100043945, Bcor, 2900008C10Rik, LOC385323, LOC100043946, LOC628441, Atp6ap2, LOC668986, EG245347, 1810030O07Rik, Crsp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169B16.T7 (MSMg01no169_b16.b1)MSMg01-169B16.TJ (MSMg01no169_b16.g1)
ACCAG366077AG366078
length720761
length of high quality
(start - end)
309 (36 - 344)38 (78 - 115)
definitionCHROMAT_FILE: MSMg01no169_b16.b1 PHD_FILE: MSMg01no169_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:43 2005CHROMAT_FILE: MSMg01no169_b16.g1 PHD_FILE: MSMg01no169_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACTG
GGGTGGAAAAGCAAATTCCTCAGCCTGCGATAAACAGAATCCCAGCTGCA
GCAAGATGACTCCAGCGGGGGAATCATTCAAACTGTGAATTCCTGAGAAT
GGAAAATGAATTCATCTGCACTAGTGGATAGAAAACTCAGGGACGATGGT
GCCTTGGTAGACTCAGTATTGCATGCCCCCTCTACCTGGGCTTGGTCACA
GTAGTGGGTGATAAAGGGGGACAGGAGTTAAGGGTTGTGTACAGCCACGT
ACCCATTTTTTCCTCTGGTCAAGTTACTTCAAGTCCCGAGGGGCATTGAA
TGAATTCCCANGNTCGAGGACCCCAGTTAGAAGCTGAAAACTGAGGTGAA
AAACCNCNAGGCTTAAAAATAGAGACAGGTCTGAGAAGCCCTGGTGTTGG
TATGACCTGAAGATGAGACCCTACAAAGTTGGGGCAAAGAGGTGGGCGAA
AGGAAGAAAGCTACCGGACAGCTGAGAACAAAACCCTCTCACACAGTGGG
TGTGGCGGTGCTGGCCTCTAAAAGCAGCACTCTGGAGGCAGAGGTAGATA
GATCTCTAAATTCCAGGTCAGCTTGCGCCACATAGTGAGTCTCAGACCAG
CCTAAGCTACTTATTGAGACCTTATCTCATATTACACTCTCACGCACCCA
CACAAATTTAATCCATACTG
CGAATGATACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGCAGGCATTATGGAGTTTTAG
AGGACAAGCCTCTGGCGTTGGTCCTCACAGGTTCTCTGTTTACCTTTGGA
CACCACGATGTCTCCATCTCCCATTTCGTGGGAGGAATGCTGGGACTACC
AATTCAAGCAGGGTACCTAGCTCCTCGCTCTTCGGGGGCATGGCGCTCTG
GATCCAGAGTCTCGTGATTGGGGGTCAAGTGCTTAACGCCCAGCCTCCCC
CACACCCTTGAGACCCAAATTCGCTGTGTTTTCCCGAGCGGCATTGACGT
CAGAAACCACGATTTCCATGAGTGTCCCCCCCCCCCCCATTGGCTGTTTT
TGANTGAATTCTGGGGTGGGGGAGCACAAAAAAAAAAAAAAAGGGGGCGT
GGGGGGGGCCCAACTGCAACTCAAAGAAAAAGGCCACCCACGGATCCCGC
TAAAATTTCCAAGCCGCGCCGACTCCCCCCTGACTCGTCCCCTAATCCTC
CCATTTCCAACCTCCCCGGAACCAATTCATACTCCCCAACCCCTAGGCGA
GTACCTACTTTTTGCGCTAATTACCCCAAATGTCCCCCAAGCACAACCCT
TACCTACCCCCTGACCAACCCGCGTCTACTTCGTATCTACATTTTCCCTC
CTTTTTGCCACACCCTTCAACCCCCCCCATTACCACCCGCGCATCGCGGT
ACTTTCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_b16.b1 MSMg01no169_b16.b1 CHROMAT_FILE:
MSMg01no169_b16.b1 PHD_FILE: MSMg01no169_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:43 2005
         (309 letters)



>mm_chrX_11414643_11415350
          Length = 708

 Score =  526 bits (272), Expect = e-154
 Identities = 296/310 (95%), Gaps = 11/310 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctactggggtggaaaagcaaattcctcagcctgcgataaacagaatcccagctgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctactggggtggaaaagcaaattcctcagcctgcgataaacagaatcccagctgc 264

                                                                       
Query: 65  agcaagatgactccagcgggggaatcattcaaactgtgaattcctgagaatggaaaatga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcaagatgactccagcgggggaatcattcaaactgtgaattcctgagaatggaaaatga 324

                                                                       
Query: 125 attcatctgcactagtggatagaaaactcagggacgatggtgccttggtagactcagtat 184
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attcatctgcactagtggatggaaaactcagggacgatggtgccttggtagactcagtat 384

                                                                       
Query: 185 tgcatgccccctctacctgggcttggtcacagtagtgggtgataaagggggacaggagtt 244
           ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 385 tgcatgccccctctacctgggcttggtcacagtagtgagtgataaaaggggacaggagtt 444

                                                                       
Query: 245 aagggttgtgtacagccacgtacccatttttt-----cctctggtcaagttacttcaagt 299
           ||||||||||||||||||||||||||           |||||||||||||||||||||||
Sbjct: 445 aagggttgtgtacagccacgtaccca------gcagccctctggtcaagttacttcaagt 498

                     
Query: 300 cccgaggggc 309
           ||||||||||
Sbjct: 499 cccgaggggc 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 708
Length adjustment: 9
Effective length of query: 300
Effective length of database: 699
Effective search space:   209700
Effective search space used:   209700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)