BAC Information

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BAC

Clone NameMSMg01-170F08
ChromosomeX (Build37)
Map Location 84,911,153 - 84,911,438
singlet/doubletsinglet
Overlap genenone
Upstream geneIl1rapl1
Downstream geneLOC667876, EG667883, LOC667891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170F08.T7 (MSMg01no170_f08.b1)MSMg01-170F08.TJ (MSMg01no170_f08.g1)
ACCAG366935AG366936
length721723
length of high quality
(start - end)
312 (45 - 356)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no170_f08.b1 PHD_FILE: MSMg01no170_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:15 2005CHROMAT_FILE: MSMg01no170_f08.g1 PHD_FILE: MSMg01no170_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCGGAGGAATACCAAATGGCTGAGAAGCACCTGGAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CATCTCACACCACTCAGAATGGCTAAGATAAAAAATTCAGGTGACAGCAG
ATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGA
AAATTGGACATAGTACTACCAGAGGATCCTGCAATACCTCTCCTGGGCAT
ATATCCTTAAGTTGCCCCAANGCTNAGCACCGACACATGCTCCACTATGT
TCATAGCAGCCTTATTTGTAATAAACAAAAACTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAAAAAATGTGGTATATTTACACAATGGA
GTACTACTTAGTTATTAAAAAGAATGAATTTGTGAAATTCCTAGGCAAAT
GGATGGACCTAGAGGGCATCATCCTGAGTAAGGTAGCACAATCACAAAAG
AACTCAAATGATATGTACTCACTGTTAAGTGGATATTAGCCCAGAAACTT
AGTATAGCGAGATATAAGGTACAATTTGCAAAACACATGACACTGAAGAA
GAACGAAGACCACAGTGTGGN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTGCCCACTCTTCAATGTAAATAC
AGTCAAAATATCTTCTTGGTTAACCGGTTGAATAAAATGAAAATATAATG
CTTTTGGCATATAATGTGATAAATGTAGGTACTAATGTAGATTTTACCAG
GCTGTCTGAGAATAAAGTACAAATTATTTATATTATTTATACATGCTCTT
CTTAAATGGCAGAACACAAGGTATACCTGATTTCATTTCATAATGTCCCC
AATTACATATATTAATTCAAACATTTACATATAAATTATAAATAGAAGAC
ACTGACAAAATTTTTATTCTCACCCCCCCCCCCTCTGAAGAACCTTACCA
TGCACAGTTTGAAGACNAAATATGAGAAAGGAGATATATTCTAGAACACA
AAGGTGTCAAAAGTTAATGTAACAGAAATACTTTAATCTAGGCTCTTTAA
TCAACTGTGAATCATTAAAGATAAGTTTTGAAGGTAGTGACATTAACTGA
GCCATCAGTTTTAACATACTTTATTATGGGGTATAGAATAATTGTAAAGA
ACTAGTGACAAGATATAGAAGCATCATTCATGAAATTCTTCAAAATATTA
CAATTTTACAACAGGAGAGATAGGAGTTAAGAAATCCTTCTAAGTTGTAC
ACATAGACCATATAAAGTCGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_f08.g1 MSMg01no170_f08.g1 CHROMAT_FILE:
MSMg01no170_f08.g1 PHD_FILE: MSMg01no170_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:15 2005
         (287 letters)



>mm_chrX_84910787_84911473
          Length = 687

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgcccactcttcaatgtaaatacagtcaaaatatcttcttggttaaccggttgaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tgtgcccactcttcaatgtaaatacagtcaaaatatcttcttggttaaccggttgaataa 593

                                                                       
Query: 61  aatgaaaatataatgcttttggcatataatgtgataaatgtaggtactaatgtagatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aatgaaaatataatgcttttggcatataatgtgataaatgtaggtactaatgtagatttt 533

                                                                       
Query: 121 accaggctgtctgagaataaagtacaaattatttatattatttatacatgctcttcttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 accaggctgtctgagaataaagtacaaattatttatattatttatacatgctcttcttaa 473

                                                                       
Query: 181 atggcagaacacaaggtatacctgatttcatttcataatgtccccaattacatatattaa 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 atggcagaacacaaggaatacctgatttcatttcataatgtccccaattacatatattaa 413

                                                         
Query: 241 ttcaaacatttacatataaattataaatagaagacactgacaaaat 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttcaaacatttacatataaattataaatagaagacactgacaaaat 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)