BAC Information

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BAC

Clone NameMSMg01-170J02
ChromosomeX (Build37)
Map Location 154,941,241 - 154,941,445
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041181, EG625253, Mbtps2, LOC100040239, LOC667460, LOC667465, Smpx, Klhl34, Cnksr2, EG667483, LOC671033, LOC667487
Downstream geneLOC436243, LOC100040371, Rps6ka3, Eif1ay, Mtap7d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170J02.T7 (MSMg01no170_j02.b1)MSMg01-170J02.TJ (MSMg01no170_j02.g1)
ACCAG367092AG367093
length762692
length of high quality
(start - end)
202 (36 - 237)287 (58 - 344)
definitionCHROMAT_FILE: MSMg01no170_j02.b1 PHD_FILE: MSMg01no170_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:33 2005CHROMAT_FILE: MSMg01no170_j02.g1 PHD_FILE: MSMg01no170_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAATC
AGGCAAGAGATGTGCTTATGTGTATAAAGAACAAAAAACAAAACAAAACA
AAAAAAAACCTCATTCCCCCTGGAGGCCGACTGAACAAAGACAGAGCAGT
GTGGAGAAAGGTAACCTGGCCTGTGGAAAAAGCAGCATGATTCATGACAA
ATTCCAAATTGTACAGCAACCTTCCTGCTAATGAAAGCATCACCNACACA
AACGGNGTGATGCTGTGCCCCTCCTGGACTTACACTAATAAATAAAAGTG
GATTAGTGTTCTTTTAAAAAATATTGTGTGTTTTTTTCAAATAGTATTGG
TACTAAAATCNCTTCAAGNGCGATACCCCTTATTAANATAATGGGTGANA
AAAAAATAATTNNNNNATTCCCAAGAATGAAATAACATGTTCGACGGGGG
GCTTTTTTCCTGCTTGGGCTAACTTTTCTTTTTTTTTTTTTGTCTAGAAG
CGGCGGGCCCCCTTACAAAAAACAATTAAAACNNTCCTTTAAGCCTCCTG
GGGGACAAAAAAAGAGTACCCCTGAAATTAAAGTAAGGGGGGCCCCTNCG
GCTCGTAACTCCTCCCGTTTATTGNNNAGGCCTTTATTCCTATGGAAATT
CCCAAAGATTGGAAGGGCTCCGATTAATTGTCTATCGTGTCCTCAGATTT
TCTTATATAAAAAATTATTCCCCATAAATCAGTAACTGATAAAGTNNNNN
NCCNCNNNTAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTGGTACAGGAGACAACTTCCTGAACAGAACACCAATGATTC
TGCTCCTAAGATCAACAATTGAAAAATGGGACCTCACAAAAAATTAAAAG
CTTCTGTAAGTCAAAAGACATTGTTAATAGGACAAAACAGCTCTATATCT
GACAGAGGTTTAATATCCAAAATATATAAAGAACTCAAGAAGGTAGGCAT
CAACAAACCAAATAATCCAATTAAATATGGGGCACAGAGTTGAACAGTTA
ATCAGAGAAATCTCAAAAAACAAAGAAGCCCTTAAAGAAATGTTTTTATT
TCCCCCCCCCCCCCCCAAATGCAAATCAAAAGGATCCTGATATTCCATTT
TGCCAATCAGAATGGCTAAGAAAAAAATCTCAAGCAACAGCACATGCTGA
CAAGGAGATGTAGCAAAGGGAACACTCCTCCTCCATTGCTGGTGGGAGTG
AAACCATGTATAACCACTCTGAAAATTAATCTGGGTGTTTCTCAAAAAGT
TTGAAATAATTCTACTTGAAGACCCAACTATATGACACCAAAAGGTGCTC
CACAGTACCACAAGGACATGTGCTCTGCTATCTTCATAGCAACTTTATTT
TGAACAGTCAGAAACTGGAACAACCAGATATTCCTCAACTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_j02.b1 MSMg01no170_j02.b1 CHROMAT_FILE:
MSMg01no170_j02.b1 PHD_FILE: MSMg01no170_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:33 2005
         (202 letters)



>mm_chrX_154940958_154941559
          Length = 602

 Score =  335 bits (173), Expect = 1e-96
 Identities = 194/205 (94%), Gaps = 7/205 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaatcaggcaagagatgtgcttatgtgtataaagaacaaaaaacaaaacaaaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gaattctaatcaggcaagagatgtgcttatgtgtataaagaacaaaaaacaaaacaaaac 429

                                                                       
Query: 65  -------aaaaaaaaacctcattccccctggaggccgactgaacaaagacagagcagtgt 117
                  ||||||||||| ||||   ||||||||||||||||||||||||||||||||||
Sbjct: 428 aaaaaaaaaaaaaaaaccacatttagcctggaggccgactgaacaaagacagagcagtgt 369

                                                                       
Query: 118 ggagaaaggtaacctggcctgtggaaaaagcagcatgattcatgacaaattccaaattgt 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggagaaaggtaacctggcctgtggaaaaagcagcatgattcatgacaaattccaaattgt 309

                                    
Query: 178 acagcaaccttcctgctaatgaaag 202
           |||||||||||||||||||||||||
Sbjct: 308 acagcaaccttcctgctaatgaaag 284


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 602
Length adjustment: 8
Effective length of query: 194
Effective length of database: 594
Effective search space:   115236
Effective search space used:   115236
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)