BAC Information

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BAC

Clone NameMSMg01-170K04
ChromosomeX (Build37)
Map Location 16,863,440 - 16,863,608
singlet/doubletsinglet
Overlap geneEfhc2
Upstream geneLOC100043949, LOC100043950, Cypt6, LOC100038939, LOC668993, Maoa, Maob, Ndph, LOC100043063
Downstream geneFundc1, EG278181, EG668994, EG436196, EG331391, Dusp21, LOC100043951, Utx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170K04.T7 (MSMg01no170_k04.b1)MSMg01-170K04.TJ (MSMg01no170_k04.g1)
ACCAG367136AG367137
length711730
length of high quality
(start - end)
320 (46 - 365)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no170_k04.b1 PHD_FILE: MSMg01no170_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:38 2005CHROMAT_FILE: MSMg01no170_k04.g1 PHD_FILE: MSMg01no170_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTCATCCCATAATATTAAATGAATCACAGGTGTTCTGTGACATT
TCCTTAGGTACATAAAGAAGCATCTACTTGCTCCAGATAGAGAGGGTACC
GATAGACCAAAGAAAGGGTTTCGTTTTAGCTAGAGTTTTACTGCTGTGAA
CAAACATCATGACCAAAGAAACTCTTATAAGGACAACAATTGATTGGGGC
TGGCTTTCTGATTCAGAGGTACTGTCCATTATCATCAAGGCAGGAACATG
GCAGCATGTAGGCAGACATGGTGCAGGAGGAGCTGAGAGTTCTAGATCTT
CATCTGAAGGCTGCTGGTAGAATACTGACTTCCAGGCAGCTAGGAAGATG
GTTTTAAAGTCCACACCCACAGTGACACGTCTAATCCAACAAGGCCACAC
CTACTCTAACAGGGCCACACCTTCTAATAGTACCACTCCCTGGGCTGGGT
ATATACAAACCATAACAGTGAACAAATGAGTTTATTGGCAATACTTACAG
AAGTGCAGCTGTGTCGTGGGTAGCTGTGCCACCAGGAGTGAGCTGAGTAA
CTTACAGGCTGTCACACCTCCAAGAAGTCCCACCTCAGTCAATTGTTTAC
CTTTTTAATCTCATTGAAATCTCGGGGAATGATTAAAAATTTGTTTGAAG
GACCTTTCATN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCA
TGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACGAGATG
ATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGAAAAGGTGGTT
TATTTTTAAATGAAGATGATTGGATGTTGTCACCCATTCTCTCCTCATAC
ACATTCAAGAGTGTGCACATGCTTTAGAGTGGCATAGACCTCTTTACATA
GAATATAAACATGAATTATTGGAAACAAAGCAGAACCAGGATCTAAAGGC
ATAAACTTATTTTTTTTAAGAATAGAACAGAAAACAAGCATTTGATGCCA
TTTCCATTCAGGTTTGGCCATATTTGTACCATTTCACCCAGAAGCACTTT
CTCTTCTCTAGAGGCCCTTCCCTTTAGCATCTCTAAGTTGAGAATAGGAA
AAGCTTCTTTGTAGGACCTTATTTAGAACTGAGAGAGTATCTGGGATTGT
GGCTGCCTATTACCACTGATTTTGTTCTTAAAAAGAACTGAATTAGGCTT
CCAATTAAAAATGATAATACGAGCTAATGAGATAATTCTATGGGTTCAGA
GCATTGGTTGTTCTTACAGAGAATCAGATTTTGATTCCCAGCACATACAT
GCCAACTCACAACAATCTGTAATCTCTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_k04.g1 MSMg01no170_k04.g1 CHROMAT_FILE:
MSMg01no170_k04.g1 PHD_FILE: MSMg01no170_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:38 2005
         (285 letters)



>mm_chrX_16863126_16863810
          Length = 685

 Score =  304 bits (157), Expect = 5e-87
 Identities = 166/169 (98%)
 Strand = Plus / Plus

                                                                       
Query: 115 aaaggtggtttatttttaaatgaagatgattggatgttgtcacccattctctcctcatac 174
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 315 aaaggtggtttatttttaaatgaagatgattggatgttgtcacctattctctcctcatac 374

                                                                       
Query: 175 acattcaagagtgtgcacatgctttagagtggcatagacctctttacatagaatataaac 234
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 375 acattcaagagtgtgcacatactttagagtggcatagacctctttacatagaatataaac 434

                                                            
Query: 235 atgaattattggaaacaaagcagaaccaggatctaaaggcataaactta 283
           |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 435 atgaattattggaaacaaagcagaaccagggtctaaaggcataaactta 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)