BAC Information

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BAC

Clone NameMSMg01-171F17
ChromosomeX (Build37)
Map Location 117,979,568 - 117,979,850
singlet/doubletsinglet
Overlap genePcdh11x
Upstream genePabpc5, LOC236983, LOC674318, EG545741, LOC100039461, H2afb3
Downstream geneLOC245576, LOC385419, EG434907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171F17.T7 (MSMg01no171_f17.b1)MSMg01-171F17.TJ (MSMg01no171_f17.g1)
ACCAG367626AG367627
length745735
length of high quality
(start - end)
319 (46 - 364)284 (70 - 353)
definitionCHROMAT_FILE: MSMg01no171_f17.b1 PHD_FILE: MSMg01no171_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:33 2005CHROMAT_FILE: MSMg01no171_f17.g1 PHD_FILE: MSMg01no171_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTAATTTGGATCT
AGAGTCTAAGTTCTGAAGTTCTTTGTATATATTGGATATTAGCCCTCTAT
CGAATATAGGGTTGGTAAAGAGCTTTTTACAATTTGTTGGTTGCCCTTAT
GTCCTATTGGCAGTGTCCTTTGCCTTACAGAAATTTTGCAATTTTATGAG
TTCCTATTTTTCAATTTTTCATCACAGAGCATAAGCCATTGGTGTTCTGT
TCAGGAAAATTTCCCCTGTGCTCATGTATTCAAGGCTCATCCCCACTTTC
TCCCCTATAAGTTTTTTTGTATCCGCCCCCCCCCCGGAGGCCCTTGAGGC
ACTTGGACTTAGCTTTGTACAACAAGATAAAAATAAATCAATTTGCATTC
TTCTATATGCTAACCTCCAGTTGAACCAGCACTATTTGTTGAAAATGCTC
TTTTCCCCCCTAGATTATTTTAGCTTCCTTGTCAAAGATCAAGTGACCAT
AGGTGTATGGGTTCATTTTTGGTTCTTCAATTCTATTCATTTTATCTACC
TGCCCATCTCCGCACCAATTACCATACAGTTTTTATTCCTATTGTTCTGC
GATTATCCTTGAGGTCAGTTTTGGTGATTCTCCCAGAATTTCCTTTATTG
TTTATTATACACTCTTGTTTTCCTGAGCTCCTTTTTTTTCTCCTG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCCCTCACATGATTTGTTCTTTTCCTTTAAA
AAAGTGTTTTGCAAGTTCTTTGAGAGTTTTATATAACATGATTTGATTAT
ATTCAGTTCCTCTTTCACAAGTCTTCTCAAACCCATCCTCTACCCTAACC
TCACAAGAACAATTTGTGCTTTGTAAATACACCTTGGTGTTTGGTCTTCT
ACTGGAATGTGATACACTTGCCAGTAATTACATTCTTAGAGTATTGTGTC
TTTCCTTCTCTCCGTAACTAACAATTAATATTCACTCCACAGTTAGAGCT
AATTATTCTTGGCACCCTTCCCCCTTTTTAATGAAATTCTTACAGTCTTT
GGCTTGCAAAGCATTTGGATCCTATCCCAAAATTATATTTTGGAGGAAGT
AGTATAATATATATGCTCCATTTAATGGTGAGAAGTATGCAGTCTCTTAT
TCTCTGCATCTGGCTAGTTATCTATATATTAATCACCATCTACTATAAAT
AGAAGATTCTCTGATGAAAGTAGAGAAGTATGTTAATTTATGACTATGAT
GATAAATCATTAGAAGTCAGTTTATACTATATCCATTTAGCAGAATAATA
GTAATAAATTTCTCTTAAGATGTATGACTTATCTAGTCACAGGTTCTTGG
TCCAACAATGATATTAAATAAAGGTTTAATCTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_f17.g1 MSMg01no171_f17.g1 CHROMAT_FILE:
MSMg01no171_f17.g1 PHD_FILE: MSMg01no171_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:33 2005
         (284 letters)



>mm_chrX_117979368_117980051
          Length = 684

 Score =  540 bits (279), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccctcacatgatttgttcttttcctttaaaaaagtgttttgcaagttctttgagagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccctcacatgatttgttcttttcctttaaaaaagtgttttgcaagttctttgagagttt 260

                                                                       
Query: 61  tatataacatgatttgattatattcagttcctctttcacaagtcttctcaaacccatcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatataacatgatttgattatattcagttcctctttcacaagtcttctcaaacccatcct 320

                                                                       
Query: 121 ctaccctaacctcacaagaacaatttgtgctttgtaaatacaccttggtgtttggtcttc 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 ctaccctaacctcacaagaacaatttgtactttgtaaatacaccttggtgtttggtcttc 380

                                                                       
Query: 181 tactggaatgtgatacacttgccagtaattacattcttagagtattgtgtctttccttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactggaatgtgatacacttgccagtaattacattcttagagtattgtgtctttccttct 440

                                                      
Query: 241 ctccgtaactaacaattaatattcactccacagttagagctaa 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctccgtaactaacaattaatattcactccacagttagagctaa 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)