BAC Information

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BAC

Clone NameMSMg01-171L18
ChromosomeX (Build37)
Map Location 105,084,728 - 105,085,046
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr23, P2ry10, A630033H20Rik, Gpr174, LOC668502, LOC622613, LOC385404, Itm2a, 4933401B06Rik, Tbx22, 2610002M06Rik
Downstream geneGm732, Gm378, LOC668516, Gm379, Brwd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171L18.T7 (MSMg01no171_l18.b1)MSMg01-171L18.TJ (MSMg01no171_l18.g1)
ACCAG367878AG367879
length746721
length of high quality
(start - end)
321 (40 - 360)283 (80 - 362)
definitionCHROMAT_FILE: MSMg01no171_l18.b1 PHD_FILE: MSMg01no171_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:01 2005CHROMAT_FILE: MSMg01no171_l18.g1 PHD_FILE: MSMg01no171_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GGGCTGTTATTCTTCATCTACTTGAAAATACCTAGTACATAAAAATGGTG
TTAGCATTTCAGGTTGGATAAAGAAGCAGCAGCACAGACATTCCCTTGTT
CACTCAGAGTACAAAGCTGTCCTGTAAAGCTACAGGGCATTGAAGCTAAG
GACAATAACTAGTTTCCAATAGGAATAGGAGTGACATTCCTATTGACTGT
AGGATTTTTTTCCTTTATTGTTTGAGTCTGCAACTTATTCTTCAGGAAGT
GTCTGGGCCAATATGATGGTAAGATAAAGGTGAACTTCATTCTGTTAGCA
ATATAAATCATTTTCTCCCCCCACGCCCCTCTGTAGGAAATGCCAATCTT
CTTCAATATCATTATTCCATTAAATGAAATTCAGAGAAATTCTCACAGCA
TATTACAAGCTTTCCCTCTATAGTCAATAGCAGATAACATTTTATCTAGT
GGTTCAAATCAGCTAAAATATTTTGTGAATCTATAAAAAGAAAATAAACT
TGGTTAAAGAATATCTAATTCAAAAAGAAGTTGCTCACAAATCATCGTAC
TATATGATAGGAATTATTTACTTATAAATTTCTCTGGTAATCTTAAGTTT
TCTTATACATATCAGACATCTACCGTTTATAAATATCATTTCATTTAATC
ATATAGCAACCTTATAAAGCTAACAGTCACACTTGTACTTTTACAA
ACACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAACTGAGAAATACCAAAGG
GCTGAGAAGCACCTGAAAAAATGTTCACAATCCTTAATCCTTAATCGTCA
GGGAAATGCAAATCAAAACATCCTTGAGATTCCACCTCACTGCAGTCAAA
TGGCTAAGATCAAAAATTCAGGTGACAGCAGATACTGGCGAGGATGTGGA
GAAAGAGGAACAAGCAAGCTTGTACAACCACTCTGGAAATCAGTGTGGCG
GTGCCTCAGAAAATTGGACATATAACTACTGGAAGATCCAGCAATACCTT
TCCTGGGCTTANATCATTAACACGCCCCCCCGCCTGGTAAGGACACATGC
TCTAGGATGTTCATAGCAGCCTTATAAATAATAACAAGAAGCTGGAAAGA
ACCCAGACGTCCCTCAACCGAGGAATGGATACAGAGAATGTGGTAAATTT
ACACAATGGAGTACTAGTCAGCTATTAAAAACAATGAATTTTTGAAATTC
CTAGGCAAATGGGTGGATCTGGAGGGCATCATCCTGAGTGAGGTAAACCA
ATCACTAAAGAAGTCAATTGATATGCACTCACTGTTAAGTGGTTATTAGT
CCAGAAACTTACACTACCTAAGATACAATCTGCTAAATACTATAAATCCA
AGAATAAGGGAGACCCAATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_l18.b1 MSMg01no171_l18.b1 CHROMAT_FILE:
MSMg01no171_l18.b1 PHD_FILE: MSMg01no171_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:01 2005
         (321 letters)



>mm_chrX_105084524_105085246
          Length = 723

 Score =  605 bits (313), Expect = e-178
 Identities = 317/319 (99%), Gaps = 2/319 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagggctgttattcttcatctacttgaaaatacctagtacataaaaatggtgtta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagggctgttattcttcatctacttgaaaatacctagtacataaaaatggtgtta 264

                                                                       
Query: 65  gcatttcaggttggataaagaagcagcagcacagacattcccttgttcactcagagtaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcatttcaggttggataaagaagcagcagcacagacattcccttgttcactcagagtaca 324

                                                                       
Query: 125 aagctgtcctgtaaagctacagggcattgaagctaaggacaataactagtttccaatagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagctgtcctgtaaagctacagggcattgaagctaaggacaataactagtttccaatagg 384

                                                                       
Query: 185 aataggagtgacattcctattgactgtaggattttttt--cctttattgtttgagtctgc 242
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 385 aataggagtgacattcctattgactgtaggatttttttttcctttattgtttgagtctgc 444

                                                                       
Query: 243 aacttattcttcaggaagtgtctgggccaatatgatggtaagataaaggtgaacttcatt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacttattcttcaggaagtgtctgggccaatatgatggtaagataaaggtgaacttcatt 504

                              
Query: 303 ctgttagcaatataaatca 321
           |||||||||||||||||||
Sbjct: 505 ctgttagcaatataaatca 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 723
Length adjustment: 9
Effective length of query: 312
Effective length of database: 714
Effective search space:   222768
Effective search space used:   222768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)