BAC Information

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BAC

Clone NameMSMg01-171N03
ChromosomeX (Build37)
Map Location 53,387,307 - 53,387,590
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666199, 4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187, LOC673263
Downstream gene3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171N03.T7 (MSMg01no171_n03.b1)MSMg01-171N03.TJ (MSMg01no171_n03.g1)
ACCAG367936AG367937
length740715
length of high quality
(start - end)
323 (45 - 367)291 (382 - 672)
definitionCHROMAT_FILE: MSMg01no171_n03.b1 PHD_FILE: MSMg01no171_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:07 2005CHROMAT_FILE: MSMg01no171_n03.g1 PHD_FILE: MSMg01no171_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:07 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAAAACTGCAGAGGTTGCTTACTGCAAGAAGGTATTCTGCAAAAG
CAATAGATGATAAAAGTACTGAAATATCTATCAGTGCTCTACAATATTAT
ATTCTAGGTGATGAAATTTCTCTTTCTCTCTGTCTCTGTGTCTCTGTGTC
TCTGTCTCTATCTCTATGTCTGTCTATCTGTTTGTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCAATTTCTACTTCTCTAATACTTATTATGAATTAT
GATTCTTTTATCTTATTCCCTCCAATGGGAATGATATTGGAATGGCATCT
GTAACATTCATTCACATTTCTACACAATTCGCCGCTCTCTATTAACAATC
AACTAATATCAAAGTCACACATTCACTCAGATTACAAAATAAGATATCTG
AGCTCATGTAAAGTGATATTCTGAATCAGAGTAGGGGAAGGGCACTTCCA
ATGTGTAGTTTCACTCAAGAGCATGGCTTTTAAGAACTGGTCAATTGGAA
GAAGATGAGACAATGTATAGAAGAGGGTGTTTCTTTTGGTTTAGTTTGGT
TTAGCTTCGCTTCTTTAGGTTACCCACAGTCATTTTAAGATACGTCGATA
ATTACTGCCTATTACTTATATCTTGAACTGAACGCGAATAGGCCCCTTAT
ATTCACGTTATTTTTTTTCCGCTACAATATGTTAGATATT
NAAATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAAAAACTTGTAATAT
TTACTTTAAACAATTCATACATTTACACCTCACAGCACTTCTTCATAACT
GTACTACCATTGCTGAGATCCTTCTTCTTCCCAAATGGTCCTTCTATTAT
TTTTATAATGGTTCTCCTTTTCTTTGTGTGTATATCTGGGAACATCCATG
CAGGTGGTTGTATTGTACTAGTTGCTATGTTTTTGTGATCACAAGGTCTA
AAGGACCACAATCTGGTCTTGAACTACACATATAAGAGCATCTGACCCTG
AATTACTCTTTTTTTTGACCCCCCTTCTCCAGTCAAGGGATCACAAACAC
CACTTTTGAAGTACTCTATTGAAATGAAAAAAAATTGAAAATATTACACC
GTATCTTCATCTGTTTCTACCTGAGGTGATATATTCTCATCTTTGTCAAA
TGCTGGGCTCTGTACTATATGGGCAACAGAAAATGGAAACATAATATGCT
ATATTAGTAAAAGGGAATAAAGTATTAATGATTTGAATTTCTCAGGAAAT
ACTGCCCAGGTGAATTTTTGAAACAGCTTTTAGAAATGACATAATTACGT
ACATGAAATCCAGTATAGGCATAGATAAGAAGTAAGGTTTCCAAATTATA
GGGCTAGTGAATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_n03.g1 MSMg01no171_n03.g1 CHROMAT_FILE:
MSMg01no171_n03.g1 PHD_FILE: MSMg01no171_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:07 2005
         (291 letters)



>mm_chrX_53387119_53387814
          Length = 696

 Score =  246 bits (127), Expect = 1e-69
 Identities = 245/289 (84%), Gaps = 15/289 (5%)
 Strand = Plus / Minus

                                                                       
Query: 4   aagggatcacaaacaccacttttgaagtactctattgaaatg---aaaaaaaattgaaaa 60
           |||||||||||||||| ||||||||||||| |||||||| ||   ||||||||  |||||
Sbjct: 472 aagggatcacaaacactacttttgaagtacactattgaagtggcaaaaaaaaa--gaaaa 415

                                                                       
Query: 61  tatta-caccgtatcttcatctgtttctacctgaggtgatatattctcatctttgtcaaa 119
           || || | || |||||||||||| |||||  ||||| || ||||||||||||||||||||
Sbjct: 414 ta-tagccccatatcttcatctgcttctatgtgaggcgacatattctcatctttgtcaaa 356

                                                                       
Query: 120 tgctgggctctgtactatatgggcaacagaaaatggaaacata-a---tatgctatatta 175
           ||||||||||| || | ||| | ||| |||||||||||||||| |   ||||||||||||
Sbjct: 355 tgctgggctctttattgtattgacaatagaaaatggaaacatataaagtatgctatatta 296

                                                                       
Query: 176 gtaaaagggaataaagtattaatgatttgaatttctcaggaaatactgcccaggtgaatt 235
           |||| ||  |||||||||||| ||||||| ||||| | ||||| |||||||| |||| ||
Sbjct: 295 gtaatagttaataaagtattattgatttgcatttccctggaaaaactgcccatgtgagtt 236

                                                            
Query: 236 tttgaaacagcttttagaaatgacataattacgtac--atgaaatccag 282
           | ||||||||||||||||||||| ||||||||  ||  | |||||||||
Sbjct: 235 tctgaaacagcttttagaaatgaaataattac--acccaggaaatccag 189


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 696
Length adjustment: 9
Effective length of query: 282
Effective length of database: 687
Effective search space:   193734
Effective search space used:   193734
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)