BAC Information

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BAC

Clone NameMSMg01-173D17
ChromosomeX (Build37)
Map Location 53,358,120 - 53,358,553
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666161, EG666199, 4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187
Downstream geneLOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173D17.T7 (MSMg01no173_d17.b1)MSMg01-173D17.TJ (MSMg01no173_d17.g1)
ACCAG368899AG368900
length717746
length of high quality
(start - end)
311 (45 - 355)613 (130 - 742)
definitionCHROMAT_FILE: MSMg01no173_d17.b1 PHD_FILE: MSMg01no173_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:52 2005CHROMAT_FILE: MSMg01no173_d17.g1 PHD_FILE: MSMg01no173_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:52 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTATGTTACAAAATGTGATAGGATCTATCTGTCTCTTTAAGGGTA
TCTCTGTCTAGCAGTTACAAATCCCAACGTCCAGGCCAACAGAATCATCA
CCACCATGAGCTTTTTTTTTTTTTTTTTTTTTTTTTTAATATGAGTTCAA
GAAGAAGGAAAATGCAATGCAAGTTAAGGGTCTTGATCCCCTATCCATCC
ATCTTAAAGCCATAGGGTGGACCCAGAAGTTTAGGTCAAAAGTGTAAATT
TCACCTATACTACAAACAACTGTGATGATTTCTAGCCATCTCTAGTTTCA
GGGGGGTATTTATNCCTACCTTCCAATCAAGCGCCATTGCCTAATGTGAA
ATAATGCCAGCTGTTTATTGCAAAAACCAAAAAAAGTTGACTTGGATGTA
AAATGAGACATCTATAATATAGATACACTTGTACACGTACACATACTCGC
AGAAAGAGGCAAGAAGTAGAGGAGCTGAATCTTAGGATCCCTCAATGAAG
AGATAGTGGAAATCTTGTAAGGCAGAGAGGTCATTGAGACACTGTATGTC
TCTATCTGCACAAAATCAGGCCAGTCTGCCTTCCATCACTGAGTTGTAGG
TTCTCACTATCCATCATCCCCATTTGAGAAGGTATGGACAGTTAATGAAA
GATGGAGAGTCAGTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTACTCAAAGTCATTGGAGACAAC
AGCAAATCTGTTTTGTCCTATTGCCGAAGGGATGAGGATTTGTGCTCCAT
TAAAAAGGTCAATAAATTGACTAATTTGATTCCTGCCTGTATATTTGTGT
GTGCTTTGTACTTTTTTCTGCTTTGTGTTGTGCTCTGTGTTCTTGATTAT
TAACTCTAGGGTCCTTACCATACTTGCAAAATGAAATATTTCTCAGTTGG
AAAAGCTCTCATTTTTTTCCTCTGTATACAATATGATTCTTTAAAAAATA
AGTTTTTGATACCTTTGTACTAATACCAAGATCAAAATTTCTGGGAAGAC
ACTTTTCATTGAAAATACAGTTTTTCATTCAATAGATTCAGATTACTGTC
CCCCCAAATCCTTCTACAACCTCTCCACTTCTCGACCCACCCAAATTCAC
ACTTTTTCTTTCTCCCTTTATTAAAATACAAACAGGCATCTAAATAATAA
TGATACTATTAATGATACTAATAACAATAATAATGAAGATTAAGATACAA
AATAAACAAATGAACCAGAACAGAACAAAGCAAACATAATAAAAAAGAGG
CAAAGAAAAAGCACAAGAAATATACATGTAGACACAGAGACATATATGTT
CACAAACACTCAGAAATCCCATAAAAACAAAAAAAAACTGCATACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_d17.g1 MSMg01no173_d17.g1 CHROMAT_FILE:
MSMg01no173_d17.g1 PHD_FILE: MSMg01no173_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:52 2005
         (613 letters)



>mm_chrX_53358112_53359122
          Length = 1011

 Score =  377 bits (195), Expect = e-108
 Identities = 381/449 (84%), Gaps = 20/449 (4%)
 Strand = Plus / Minus

                                                                       
Query: 13  gtgctccattaaaaaggtcaataaattgactaatttgattcctgcctgtatatttgtgtg 72
           |||||||||||||||||||  || ||| |||| |||||| |||| |||| |||||| |||
Sbjct: 442 gtgctccattaaaaaggtccttacattcactagtttgatgcctgtctgtctatttgagtg 383

                                                                       
Query: 73  tgctttgtacttttttctgctttgtgttgtgctctgtgttcttgattattaactctaggg 132
           |||| ||||||||| |||||| ||||||||| |||||||| |||  || |||||||| ||
Sbjct: 382 tgctatgtacttttgtctgctgtgtgttgtgttctgtgttattggctactaactctacgg 323

                                                                       
Query: 133 tccttaccatacttgcaaaatgaaatatttctcagttggaaaagctctcatttttttcct 192
           |||||||||||||||||||||||||     ||||||| ||||| || |||| ||  ||||
Sbjct: 322 tccttaccatacttgcaaaatgaaa-----ctcagtttgaaaatctttcatattcgtcct 268

                                                                       
Query: 193 ctgtatacaatatgattcttt-aaaaaata--agtttttgatacctttgtactaatacca 249
           ||||||||||||||||||||| ||||||||  ||||| ||| ||||||||||||  ||  
Sbjct: 267 ctgtatacaatatgattctttaaaaaaatatcagtttatgagacctttgtacta--ac-- 212

                                                                       
Query: 250 agatcaaaatttctgggaagacacttttcattgaaaatacagt-ttttcattcaatagat 308
             ||| | |||| | |||||| |||||| |||||||||||| | |||||||||| || ||
Sbjct: 211 --atctacattt-ttggaagatacttttaattgaaaataca-tcttttcattcagtacat 156

                                                                       
Query: 309 tcagattactgtccccccaaatccttctacaacctctccacttctcgacccacccaaatt 368
           || |||||| |||||||||| |||||||| | |||||||||||||| |||||||||||||
Sbjct: 155 tctgattacagtccccccaactccttctatatcctctccacttctctacccacccaaatt 96

                                                                       
Query: 369 cacactttttctttctccctttattaaaatacaaacaggcatctaaataataatgatac- 427
           ||||| |||||||| |  |||||||| |||||||||||| ||||||||||| ||||||| 
Sbjct: 95  cacac-ttttctttttttctttattagaatacaaacaggtatctaaataatgatgataca 37

                                        
Query: 428 tattaatgatactaataacaataataatg 456
            ||| ||||||||||||| || |||||||
Sbjct: 36  aatt-atgatactaataagaacaataatg 9


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1011
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1001
Effective search space:   603603
Effective search space used:   603603
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)