BAC Information

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BAC

Clone NameMSMg01-173J10
ChromosomeX (Build37)
Map Location 5,641,870 - 5,642,150
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668967, LOC434724, LOC100043935, LOC668968, LOC546182, Mycs, LOC668969, LOC668970, OTTMUSG00000016453, LOC627412, LOC436185, LOC668971, LOC100043936, LOC668972, Nudt11
Downstream geneLOC208428, AU022751, Nudt10, Bmp15, Shroom4, LOC100043937, Dgkk, Ccnb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173J10.T7 (MSMg01no173_j10.b1)MSMg01-173J10.TJ (MSMg01no173_j10.g1)
ACCAG369154AG369155
length913776
length of high quality
(start - end)
74 (97 - 170)283 (126 - 408)
definitionCHROMAT_FILE: MSMg01no173_j10.b1 PHD_FILE: MSMg01no173_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:18 2005CHROMAT_FILE: MSMg01no173_j10.g1 PHD_FILE: MSMg01no173_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCCCCCCCTTTCCTCANCCCCCCATTCCCCCTTGCTCGATANNNNAATA
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTAAAAAGGACTAAACTAAACATTTTAACCTTTATTTAGTTGG
TGTGTGTGTGTGTGTGTTTGTCCCCGTGTGTGAGTATGTATAAACCTCTT
TCCCTCTTTTTTATTTTCCCCCCCTTCACCCTTCCTTTTTTCCCCTTCAT
TTATCTTTTCCCATTATCCCCTTTTCCCCACCTCCCCTTAATCAATCTCT
TTCTCTTTTATCCCATTTCCCCACCCTTTACACACCCTTTAACCCTCTCA
TTCCCCCACCCACCTTTTTTTTTCTAAAACACCCACATACTAACTGAAAA
AATTTAGGTAAGATCCCAAAAACATATCCCCATTTTATAATTAATATTTT
TTAATTTTTTTCCTTCCCTTTTCAATAAAAAAAAAAAAAAATTTTTTTTC
CCGCCGCGGTTTGTTTACTATTTTTACTTTCATATCTCAAAATTTTTTCA
TATACTACTTATTTTATTATTTTTTTTTTCCCCCCGCCCCCTCCTTATCC
ATTTTTATATCCCCACCCTACCCCCATTTTTTTTTTATCCACCATTTTTC
CTCACCCTCATATCACTAAATTTCTCTTCTTTGTCCCCATCTCACAATAC
TTTGTCATCTCTCCACTATTTTTTTTTTTTTTCTCCCCCCTTCCCTTCTC
TTTTTTTTATATACACTCCTCCCCCCCCCCTTTTCTTCAACCTATAATAA
CTCTTTCTACACCCCATCCTCATTATTAACTTCTTTTTTAATTTTTCTTA
TATTACCTAATTTTCATATTCTCTCTCACTCCTTTACACCCCTCCACACT
TTTTACTCCCCCC
CTTTTTTTCTCTCTTTTCTTTTTCCAANTCAACTTCNCCAATNNNTTTTT
CTATGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTGTTTTCTCTAGAAAGCATTA
GACACATAAATAGAAAGCCATTCGAATTTATCTAAGGCCCCTAGTTTCCA
GTTTCAGAAAACCACTCGCAACACTAGGTCAGAAATTTTATTAGCTCCAG
GTATATTCAACCCATATGATACTTCACTTAGCTCTGCAGGCTCAGCTCCT
AGGAGGGAACACTATCCTTCTCAGAGAAAATGCCATGAAACTTGGCAACT
AAAGAGGAAGTAAGATTCTTCCAGAAGTAGCAAAATGGAACTCCAGAGAT
AAGGAGTAAAATACCTGACGTTTCGGAACCCAGGCAGAGTATGATCTTTT
TACAAAAAGGAATTGCTTTGAAGAAAAAAAAAATAAAGTATGTGAACAGA
AACTGAAGGGATGCAAGCATGTGTGGCAGTGTATATCTATAATCCAGGTA
TGCCAGAGGGTCAAGGCAGGGGAGGAAGGTTGAAACCAGCCTCAACTACA
GGGATAAATTCTGTCACATTGACATTTAAGAAGAGAAAAGGGTACTACCC
TTTAACTCTCTGCAGGAGACACCCATATCCTAACCCAGAGCTATCTCTCC
TCTCCTCTGCACAACTCCCCCAAGCCCAGGACAAGATGGAAGTGGCGCCC
AAATAAAAATACTCCCACTGAATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_j10.g1 MSMg01no173_j10.g1 CHROMAT_FILE:
MSMg01no173_j10.g1 PHD_FILE: MSMg01no173_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:18 2005
         (283 letters)



>mm_chrX_5641670_5642352
          Length = 683

 Score =  528 bits (273), Expect = e-154
 Identities = 279/281 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtgttttctctagaaagcattagacacataaatagaaagccattcgaatttatctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtgttttctctagaaagcattagacacataaatagaaagccattcgaatttatctaa 260

                                                                       
Query: 61  ggcccctagtttccagtttcagaaaaccactcgcaacactaggtcagaaattttattagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcccctagtttccagtttcagaaaaccactcgcaacactaggtcagaaattttattagc 320

                                                                       
Query: 121 tccaggtatattcaacccatatgatacttcacttagctctgcaggctcagctcctaggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccaggtatattcaacccatatgatacttcacttagctctgcaggctcagctcctaggag 380

                                                                       
Query: 181 ggaacactatccttctcagagaaaatgccatgaaacttggcaactaaagaggaagtaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaacactatccttctcagagaaaatgccatgaaacttggcaactaaagaggaagtaaga 440

                                                    
Query: 241 ttcttccagaagtagcaaaatggaactccagagataaggag 281
           |||  ||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcagccagaagtagcaaaatggaactccagagataaggag 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)