XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAC
AGGATACCAGCATACAAGGTTATTGCTCTATTGCAGAAACACCTGTCTGA
AGCCAGAAGAGGGAGTGTGTACCAAACTGTACCTTACTCTATTGTTAGAA
GCACAAAATCTCCCAAATGCTCCAAATGGTGTTGATCAGAGGCTACTCGG
AAGGGCTTCATAAAGAAATGACCACTGATTGTTGCTACTGCTGTTGATAC
CACCATCACTTTATGTTGAAACAGAGAAGGAGGAGAAAGAGGAGGATGAG
GAGGATGAGGAGGGAGAGGAAGTTNNNTTCTTTTCTNTTTCTTTTTCCTT
TTTTTTTTTCCCTCCTCCCCTTCTTTTCTCTTTTCCCCTCCCTTCCTTCT
TCCGCTTTTTTCTTCCCCCTACTGTCTTTTCTATTCTCATTTTTTTTTTT
ACACTACTTTCTCTTTTTTTTTTTTTATATTCCCTTTCTCCATCTGTTTA
AATTCAGTTCTTTCTTTCCTTATGCTTAACTCCTATTTCCCCACTCTTTC
CTTCCTATCATCTCACTGTTATCTGACTTATCACGGTTTCATTATCCATC
ACGTTTTTCCGTTTTCAGTTTTTTTCCCTTCTTCTTTTACTCTATTTTAA
CGCTTTTCCGTTATCTTTTCGCTTTCTCTTCCTTTCCATGTTTACTTATT
TTTCTTTATTCTCTCCGTTTTTTATCTCTCCTTTACCCTCACCATCCATA
ATTTTACTTTTCCTATCTCCATTTTCACTACTCCTTTTTTCCTTATATAT
TTAC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGGGATGGAACTGCAATTATCAG
GCTTGTCACCAAAACTTTACACAGTGACCCCAAGATCATAATCTTTTTGA
AAGTCGGAAGGATGTTTTAAATTTATCCTAATCCAGAGTGCATGGTGTAA
TTCCACAGACATAGCTTCATATTGGAAGAACGGGTTTTCCTGTTTCTTGA
GCTTTGTATTGGAAATGTAGGCTGCAGTTCATTAGTTTACAATGTTGGCC
ATAGATTAGAATCACTTTGAGGACTTACAGAAATATACTGATGGATGCAC
TTTCCTTGCTCAGACAACAAATTAATCCCTGGCAGTAGGGCTTAGGTATC
AGGTATAAAAATAGAACTAAGGCAAAACAAAACAACTAGTTGGTTCAATG
ATGATGCTATGCAGCCAGAAAGAGAAAAACAGAGTGTGCTCTTCCTTATT
TGTGGAGCCCACCTTCTAATTTGTATATATGTGTATTTTTGTGAGAGTAT
GCATATGTATTCCTGATAGGAAGCTAGAAGAAAAAACAGGTTTTAAGGGA
GATATGTACAGAAGGCAACAGCAATTAATATGAAAGTAGAAGGCGATATA
TCAGGTGTGAAGGAGTTTGTGAAAGCTAGTCAGGAAAGTGGGATTGGTCA
AACAACTAACTAACTAACTAACTN

Query= MSMg01no173_k03.b1 MSMg01no173_k03.b1 CHROMAT_FILE:
MSMg01no173_k03.b1 PHD_FILE: MSMg01no173_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:21 2005
         (286 letters)



>mm_chrX_139872457_139873142
          Length = 686

 Score =  522 bits (270), Expect = e-153
 Identities = 279/282 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaacaggataccagcatacaaggttattgctctattgcagaaacacctgtctga 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gaattcaaacaggatagcagcatacaaggttattgctctattgcagaaacacctgtctga 378

                                                                       
Query: 65  agccagaagagggagtgtgtaccaaactgtaccttactctattgttagaagcacaaaatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agccagaagagggagtgtgtaccaaactgtaccttactctattgttagaagcacaaaatc 318

                                                                       
Query: 125 tcccaaatgctccaaatggtgttgatcagaggctactcggaagggcttcataaagaaatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tcccaaatgctccaaatggtgttgatcagaggctactcggaagggcttcataaagaaatg 258

                                                                       
Query: 185 accactgattgttgctactgctgttgataccaccatcactttatgttgaaacagagaagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 accactgattgttgctactgctgttgataccaccatcactttatgttgaaacagagaagg 198

                                                     
Query: 245 aggagaaagaggaggatgaggaggatgaggagggagaggaag 286
           |||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 197 aggataaagaggagaatgaggaggatgaggagggagaggaag 156


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no173_k03.g1 MSMg01no173_k03.g1 CHROMAT_FILE:
MSMg01no173_k03.g1 PHD_FILE: MSMg01no173_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:21 2005
         (564 letters)



>mm_chrX_139727365_139728328
          Length = 964

 Score = 1029 bits (532), Expect = 0.0
 Identities = 556/564 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagggatggaactgcaattatcaggcttgtcaccaaaactttacacagtgaccccaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tagggatggaactgcaattatcaggcttgtcaccaaaactttacacagtgagcccaagat 260

                                                                       
Query: 61  cataatctttttgaaagtcggaaggatgttttaaatttatcctaatccagagtgcatggt 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 cataatctttttgaaagtcggaaggatgttttaaatttatcttaatccagagtgcatggt 320

                                                                       
Query: 121 gtaattccacagacatagcttcatattggaagaacgggttttcctgtttcttgagctttg 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 gtaattccacagacatagcttcatattggaagaacggggtttcctgtttcttgagctttg 380

                                                                       
Query: 181 tattggaaatgtaggctgcagttcattagtttacaatgttggccatagattagaatcact 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattggaaatataggctgcagttcattagtttacaatgttggccatagattagaatcact 440

                                                                       
Query: 241 ttgaggacttacagaaatatactgatggatgcactttccttgctcagacaacaaattaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgaggacttacagaaatatactgatggatgcactttccttgctcagacaacaaattaat 500

                                                                       
Query: 301 ccctggcagtagggcttaggtatcaggtataaaaatagaactaaggcaaaacaaaacaac 360
           | |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 501 ctctggcagtagggcttaggtatcagatataaaaatagaattaaggcaaaacaaaacaac 560

                                                                       
Query: 361 tagttggttcaatgatgatgctatgcagccagaaagagaaaaacagagtgtgctcttcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagttggttcaatgatgatgctatgcagccagaaagagaaaaacagagtgtgctcttcct 620

                                                                       
Query: 421 tatttgtggagcccaccttctaatttgtatatatgtgtatttttgtgagagtatgcatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatttgtggagcccaccttctaatttgtatatatgtgtatttttgtgagagtatgcatat 680

                                                                       
Query: 481 gtattcctgataggaagctagaagaaaaaacaggttttaagggagatatgtacagaaggc 540
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 gtattcctgataggaagctagaagaaaaaacaggctttaagggagatatgtacagaaggc 740

                                   
Query: 541 aacagcaattaatatgaaagtaga 564
           ||||||||||||||||||||||||
Sbjct: 741 aacagcaattaatatgaaagtaga 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)