BAC Information

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BAC

Clone NameMSMg01-173L01
ChromosomeX (Build37)
Map Location 41,505,370 - 41,505,685
singlet/doubletsinglet
Overlap genenone
Upstream geneOdz1, Gm362, LOC100039977, LOC100039987
Downstream geneLOC637141, Wdr40c, Wdr40b, LOC665585, 1110059M19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173L01.T7 (MSMg01no173_l01.b1)MSMg01-173L01.TJ (MSMg01no173_l01.g1)
ACCAG369222AG369223
length715774
length of high quality
(start - end)
321 (45 - 365)164 (127 - 290)
definitionCHROMAT_FILE: MSMg01no173_l01.b1 PHD_FILE: MSMg01no173_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:25 2005CHROMAT_FILE: MSMg01no173_l01.g1 PHD_FILE: MSMg01no173_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACAAAGTTGAAAACACAAGCCAACTTAATCACATCTCAAGAGAAAT
GAACGTCATTAGAAACTGACTGGAGAATGACCCAGGTCTTTGAATTAACA
TAAAGGAGTTCAAATTTATGTATGTTTTAAAATATATGATATCTGAAAAA
ATATGAACAAATAGAAACTATCAATTTCAGAAGGATAGCACCAGAAAGTA
CATTTTTGTGAATAAAATATTAAAAATTCTCTTTGATTTAAAAATGATCA
GATGACTTGAAGATATAAAAATGGATGTTACATATTATTGAGAAATAGAA
AATGAGAAATCATATTTAAATATCCTCCCCCACACCTTTAAAATCACAAT
AGAAAGTCTAATATGTATCTAACAAAAGCTTAGAATTTGAAATTGTATTA
GGAAAAACAAATTGAGGAAAAATATTCAAAGATATAAAGGCTTAAAGTTT
TACAAAATGTATACATTTAGTAACTAAATAACCTACTTTAACTCAAAACA
GAATAAACTCTAAGGACGCTGCAACAAAAAACCAGAAGGCTAAATCACTC
AAAGGAAATATATATATATATATATATATATATATATATATATACATATA
CATATACATATACATATATATATATATTCAAAGGAACCTTGATAATGCAG
TAAGAAATATGTATT
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAATTAGAGATTGAGTCTCATAA
AGATGTAGGGCTATCGATATGACCAATCTGATTAATCCTGTCTGATCCTG
CCTGTGCGCACATGAGCACACACACACACACACAAACACACACAGAGAGA
GAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAAAGAGAGAGGAGAGAAAGAGAGTGGGGGGAGNTTTCTTTTNC
CCGCCTTCCTGNCCCCTTTTTTTTTTTTTCCTTCCCTCGCCCCCCGCTCT
TTGCCCCCTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCNNNNNTGGTTG
GGTGGTGTGTTGTTGCCCCCCCCCTTTCCCCTAAAAAAAAAAAAAGCTCC
CCCGGGGCCCGGGGGGTCCCAATATTTAACGCTTTGTAACTAATTCTCTA
CTTTCCCCCCCCCTTTGCCGTTCCCTTCTTATACCTTTATCCCCGACTTC
CCCTCATATTCCCCCCCTCCTTTATTACCCTTAACTTGTTCATAGCATTC
TTCAACCTGACCTTTCTCCCACCCTTTCTCGTGCCGCCCAGTGATAACTT
CCCTCCCTGTCTACTATTCTTACATTCTTCTCCCGTTCATACCGCGTACC
GATCCCTCCTTATTCCCCAATTTACACCCCCTACTGTCTCTTTCCAACTC
CGGTCCCGCCGTCTCCTACCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_l01.b1 MSMg01no173_l01.b1 CHROMAT_FILE:
MSMg01no173_l01.b1 PHD_FILE: MSMg01no173_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:25 2005
         (321 letters)



>mm_chrX_41505166_41505886
          Length = 721

 Score =  603 bits (312), Expect = e-177
 Identities = 315/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacaaagttgaaaacacaagccaacttaatcacatctcaagagaaatgaacgtca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattcacaaagttgaaaacacaagccaacttaatcacatctcaagagaaatgaacgtca 461

                                                                       
Query: 65  ttagaaactgactggagaatgacccaggtctttgaattaacataaaggagttcaaattta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ttagaaactgactggagaatgacccaggtctttgaattaacataaaggagttcaaattta 401

                                                                       
Query: 125 tgtatgttttaaaatatatgatatctgaaaaaatatgaacaaatagaaactatcaatttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tgtatgttttaaaatatatgatatctgaaaaaatatgaacaaatagaaactatcaatttc 341

                                                                       
Query: 185 agaaggatagcaccagaaagtacatttttgtgaataaaatattaaaaattctctttgatt 244
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agaaggatagtaccagaaagtacatttttgtgaataaaatattaaaaattctctttgatt 281

                                                                       
Query: 245 taaaaatgatcagatgacttgaagatataaaaatggatgttacatattattgagaaatag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 taaaaatgatcagatgacttgaagatataaaaatggatgttacatattattgagaaatag 221

                           
Query: 305 aaaatgagaaatcata 320
           ||||||||||||||||
Sbjct: 220 aaaatgagaaatcata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)