BAC Information

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BAC

Clone NameMSMg01-174K19
ChromosomeX (Build37)
Map Location 121,322,313 - 121,322,630
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942
Downstream geneLOC100039828, EG434843, EG665463, EG665522, LOC100038969, LOC100038978, EG665579
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174K19.T7 (MSMg01no174_k19.b1)MSMg01-174K19.TJ (MSMg01no174_k19.g1)
ACCAG369903AG369904
length735742
length of high quality
(start - end)
318 (45 - 362)355 (388 - 742)
definitionCHROMAT_FILE: MSMg01no174_k19.b1 PHD_FILE: MSMg01no174_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:36 2005CHROMAT_FILE: MSMg01no174_k19.g1 PHD_FILE: MSMg01no174_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCATTCTAACTCAGTTCTGGTTGGTTGAACATAATTTTTAGGAGG
CAATCATGCTGAGGATACAATCCAAAGCTTTTCATGAATCATGGTATCTA
TATTTGGTGCCTTGCTAATTCAGCTAAGGATATGGATACCCCAGGATGTG
AAGAACGGTTAGAAGGTGTGGCAATGCTAGGACCTCATGAGCTAAGGTAA
GCAAATTAATTTTTGCTCAAAATATTATGGGGATTTTTATACTCTGTTCA
TCTCTCCTGTTACAAGGATATCAGCACCTCCTTTCCCCGAGGGATAATCA
CTCCTTCTACTTTTTTTTACCCCCCCCCCACCTATTCCCACTGAAGCAAA
GGGAGCCTCTGATCATACCAGTTTGACCAAAACAGGCTTGGACATTCATT
TAGGTCGAGGAATCCCACAAAACTTGCTGATATTATGGACTGAACCTTAC
ATATTTTTCCTAATGTTTCCCAGATTTTTCCTCAGTTCAAGGTAAACTCT
AGGTTCAAAAAGGTTTCAATGAAGAATCTTTGACATAGATACTCTTTCAA
GGAAGAAACTTTCATTTTATCTTTGAATTAGGGAAATATAGATTCACCCT
TAAATTTGACCAGGGATTAATACAAATTCTGCTGCTTATGGAGCCTACAG
AAAAGCCACTGACATGAAAAACTCTAGCCGATGTN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCTGGGAAGAGGAGGTGGGACTTGAT
GCATTAGGGACTAATAAGATTTCCCCGACATTACCGTTAGGCGAAGAAGG
TTTGGAGCCCTCTTTGTCTGATGGGGCCTGTTGCTTGACAAGAGAGTTCT
TCTCCAAAATGCTTTGGAGGAGAATTGGAAAGAATACAGTTATGTAGGGT
AGGGAACAAACTTTTGAACTCCTTCTGGAAGAGGAGGCATTTATGAATTT
CTTTTAAGCACACGTGGGAAGTCTATGGGATGCCTGGGCAGATGTGCAAT
GTCCCATAGAGTCTTGGTTTTTTTGCGCCCCTTCTCAAAACTTTTTGGTG
CATAAGGACCTGCCCTGAGAATTTGAAGATCCCAAATCTCCTTGGTTAGA
TTGGGAAGGGTGTAGGGAACCTTGAATGTGTGGAAAAATTACCTGTCCAT
GTTGTCCAGCAGACGATGGCCCAGGCACTGTGTTATCTTATTTGAATTTG
TGACTGGTATCTCCAGCCCTGTGTTTGGAAGATGCTGCAGGCACTCTGGC
ACCCGACTGGTCAAAATCCTTAGGTTCTTCAAACCCAGTGGACATAGGCT
GGCTTCTTTTCACCTGTCTATGCATGGACACAGCAGATGAGGCCACTCAT
TTTCTGGTTGAAGGTGGTAAAACAGATTGTCTGGTACCCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_k19.g1 MSMg01no174_k19.g1 CHROMAT_FILE:
MSMg01no174_k19.g1 PHD_FILE: MSMg01no174_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:36 2005
         (355 letters)



>mm_chrX_121322075_121322831
          Length = 757

 Score =  337 bits (174), Expect = 9e-97
 Identities = 285/322 (88%), Gaps = 10/322 (3%)
 Strand = Plus / Plus

                                                                       
Query: 39  aagatcccaaatctccttggttagattgggaagggtgt-agggaaccttgaatgtgtgga 97
           ||||||||| |||||||||| ||||| ||||||||||| | |||||||||||| ||||| 
Sbjct: 239 aagatcccagatctccttggctagatcgggaagggtgtga-ggaaccttgaatttgtggg 297

                                                                       
Query: 98  aaaattacctgtccatgttgtccagcagacgatggcccaggcactgtgttatcttatttg 157
            |||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||
Sbjct: 298 gaaattacctgtccatgttgtccagcagaagatggcccaggcactttgtgatcttctttg 357

                                                                       
Query: 158 aa-tttgtgactggtatctccagccctgtgtttggaagatgctgcaggcactctggcacc 216
           || ||| ||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 358 aacttt-tgactggaatctccagccccgtgtttggaagatgttgcaggcactctggcacc 416

                                                                       
Query: 217 cgactggtcaaaatccttaggttcttcaaacccagtggacataggctggcttcttttcac 276
           | |||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 417 caactggtcaaaatccataggttcttcaaacacagtggacatagactggcttcttttcac 476

                                                                       
Query: 277 ctgtct-atgcatggacacagcagatg-aggccactcattttctggttgaagg-tggtaa 333
           || ||| | | |||| ||||| ||| | |||| |||| ||||||||| | ||| || |||
Sbjct: 477 ct-tctcagggatgggcacagaagaaggaggctactctttttctggtggcaggctg-taa 534

                                 
Query: 334 aacagattgtctggta-ccctg 354
           ||||||| |||||||| |||||
Sbjct: 535 aacagatggtctggtatccctg 556


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 757
Length adjustment: 9
Effective length of query: 346
Effective length of database: 748
Effective search space:   258808
Effective search space used:   258808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)