BAC Information

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BAC

Clone NameMSMg01-175G22
ChromosomeX (Build37)
Map Location 17,804,291 - 17,804,570
singlet/doubletsinglet
Overlap geneUtx
Upstream geneEfhc2, Fundc1, EG278181, EG668994, EG436196, EG331391, Dusp21, LOC100043951
Downstream geneLOC100043952, 4930578C19Rik, LOC100043098, EG628855, LOC385333, EG628871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175G22.T7 (MSMg01no175_g22.b1)MSMg01-175G22.TJ (MSMg01no175_g22.g1)
ACCAG370424AG370425
length716715
length of high quality
(start - end)
313 (48 - 360)283 (78 - 360)
definitionCHROMAT_FILE: MSMg01no175_g22.b1 PHD_FILE: MSMg01no175_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:30 2005CHROMAT_FILE: MSMg01no175_g22.g1 PHD_FILE: MSMg01no175_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAACTGAGGAATATCAAATGGCCAAGAAGCACATAAAGAAAT
GGTCAACATCCTTATTCATCGGGAAATGCAAATCAAAACAACCCGGATAT
TCCACCTCGCACTAGTCAGAATGGCTAAGATCCAAAACTCAGGTGACAGC
AGATGCTGGTGAGGATATGGAGAAAAAGGAACACTCCTCCATTGTTGGTG
GGATTGCATGCTGGTACAATCACTGAGGAAATTGGTCTGGCAATTCCTCA
GAAAACTGGACATAGTACTACCTGAGGACCAAGTTATACCACTCCTGGGC
ATACACCTAATATATGTTCCACCCCACCCCCCACGGACATATGCTCTACT
TTGTTCATAGCTGTTGTATGCTGCCCTGCGGCCTACTTGAACCAGTTACA
CCAGGGAGGCAGGCTGGGGCTGAAAGAGACTTAGAAGGCGAGAGATTAAT
GGAGACTAAGACATGATTCTGTTCAAGGCCTGCCAGTTTACTAAGAGAGT
CTACTTATAAAAGGGGAAGGCCCATCCCCAGCCAGTCCATTCTTGGTGTC
TGGAGCCAGCCTGTAGGATGTTCCTCCGGAATATCTCAGGGGCTTCTCAG
CGGGTAGCAGTGTCTGGAGAGAGCAGTGGCAGGTGGCAGAACAAAAGAGC
CATATAGGTCGGGAGG
CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTTCTTTCTATCTCCATTTTC
TAAGTCCTATGATATGATATATGTCCGTACTACCATAACTTCATTGGTGT
TGTATGTGGTTTTGTTTTGTGTGTCTGTTTTATTGTTTTTGCCAGTCTAC
CCATCCTCAGAAATATGAAATCAATGACCATATTTTTCAATCATACAGCA
TTTTTTCCCCATTAAATTGGCCACTAAATATCTCCTGGGTTTAGTTGGTG
GTGGGCAACTTAATTAACTTAACTTTCTTAATTCATTTGTAAAATGATTT
ACTATTACCTTAATGNTTCTTCCCCCCCCCCCGATAAAGCCTTTTGTTTG
TTCTTTCCTGCATCACCCCCCACCCAGAAACAGATAGATCTTATTGGCAT
TTTAACTCAGTTGAATGTATTTAGGGTGTGATTTTATTATATTTTAGTGC
TGTTAATGATAATTACTCTTAATAAATAGTAATTTCTATATGTATATTTA
AAGCAGTGTGCTATATGGCTGGTTCTCTAAAAGTACACTGATTCTGACAG
TCTGTATACTGCCTCACATTTCTATACCCTGCTGTATTATTAAAATTCTT
TCTCACATTTGAAATTAAAATAAGAACCATGTTTTTTCATTATTCAATAC
CGGCGCGTCTGTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_g22.g1 MSMg01no175_g22.g1 CHROMAT_FILE:
MSMg01no175_g22.g1 PHD_FILE: MSMg01no175_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:30 2005
         (283 letters)



>mm_chrX_17804091_17804773
          Length = 683

 Score =  518 bits (268), Expect = e-151
 Identities = 277/280 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgttctttctatctccattttctaagtcctatgatatgatatatgtccgtactaccata 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 201 ttgttctttctatctccattttctaagtcctatgatatgatatatgtgtgtactaccata 260

                                                                       
Query: 61  acttcattggtgttgtatgtggttttgttttgtgtgtctgttttattgtttttgccagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttcattggtgttgtatgtggttttgttttgtgtgtctgttttattgtttttgccagtc 320

                                                                       
Query: 121 tacccatcctcagaaatatgaaatcaatgaccatatttttcaatcatacagcattttttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacccatcctcagaaatatgaaatcaatgaccatatttttcaatcatacagcattttttc 380

                                                                       
Query: 181 cccattaaattggccactaaatatctcctgggtttagttggtggtgggcaacttaattaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccattaaattggccactaaatatctcctgggtttagttggtggtgggcaacttaattaa 440

                                                   
Query: 241 cttaactttcttaattcatttgtaaaatgatttactatta 280
           |||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 cttaactttcttaattcatttgtaaactgatttactatta 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)