BAC Information

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BAC

Clone NameMSMg01-175M06
ChromosomeX (Build37)
Map Location 143,707,400 - 143,707,622
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666730, EG245663, Htr2c
Downstream geneIl13ra2, V1rb10, Lrch2, LOC100039462, LOC666789, LOC434863, EG623995, EG624023, LOC666184, LOC100039511, LOC666812, LOC100039519, LOC434864, EG624096
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175M06.T7 (MSMg01no175_m06.b1)MSMg01-175M06.TJ (MSMg01no175_m06.g1)
ACCAG370661AG370662
length736763
length of high quality
(start - end)
235 (120 - 354)484 (69 - 552)
definitionCHROMAT_FILE: MSMg01no175_m06.b1 PHD_FILE: MSMg01no175_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:55 2005CHROMAT_FILE: MSMg01no175_m06.g1 PHD_FILE: MSMg01no175_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:55 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCCT
AATTTATACCAAGTGTACCTGATGACTCTTTGAGCCACTGAGAGTGATTT
AAGCTCCACTTCTAGCCCGGGGGGACAGTGTGAGTCTTCTTGGTGCTGAA
GGGATAATTCTGAGGTTTGTGTGTCAGAATCAAGACTTGGAGGACCCATT
GACAGAGTGATAATTTTGATGTATCCACAAACAAACTATAAAGGATGCCA
TCCTTTAGAGGCAGAAAGGTTCACACCATGTTGGGGAAAGTAGAAATGCC
AAAGACTATTGTATCTGTACAAGATCAAGGGTCGATGTGGAGAGGAGAGT
AGGCCTGATTATTTCATGATTGAGACTTCCTGGGAAGCTAGAACACACAA
ATCATGCCCCCCCTGCTACAGCTTAATCAATCTCCAGTGTGCTAGGAGAC
ATTTCCCAGCTAGTTCTCCTGATAAATCTGCTGCCTACTTCTAAAAATGG
CAAGGCTTTCTCATTTTTGCTGGTCAGCTTAATGTCTATGTCCTGGGTTC
ATTAATGTGCTGGCTACTCTTAAGCTCTGAGACTTCAGGAACCCGGTTCC
TGATCCTTGGACCGGCGTAATTATGTCTGAGTATCATAATAACAAGCACT
TGGTGCACCTTATATCAAGGGAATGGATTTTTCTTGTACTAGATCCGATC
TACTAGCTAGTTCTAGCCCCTCCATGTTCATTTAAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTTCTAGTTTCTATGTGCACCACACATGCAT
GTTTATAAACACAAACATCCAAAAACAAATTACTTAAATAAATAAAACAA
TTGAAAATTACAAACAACAGCACCTTCATCTGAAACAAAGTAGGAGAGTC
TTGTTTGGGGTCCGTTTTATTTTAGCTTTCAAGTTAGTATTGTAAACTTG
GAAAATGGAAAGCCTCTGGGTAGTAGTGGCAGCTAAAATACTACCTCCTT
TTTGCTCTTCAATGACAGACGACTGATTGAGCCTTTCTCACCCTTAGTAC
ACATGTGCAAACACTGCCAATCAGCAAGGGCCTTGGCTGAGATTGTTTTC
CCGCTATCCCCACCCTGTTACCCAGTATGCTTTGTGGTAGTCATCAAGCC
GAGTCTTGTGGAAGCAAGGTTCTTGAGGAAGCATGGTAGGGAGAAGTCTC
AGTAGAGGTAGTCAATTGTCTGTTGAAAGATGATTAATACTGTTTGAGCT
GTGGGCCTGTGTGGTGAAGAAGGTGGAGGGGTGTAATTTCCAAAATTTTA
TTTTATCTTCTTCCTTTATAACCCCTTTTTCTAATATTTATTCTTCATCA
TAAATCATCCTCTTTTACTCCATATCCCTTTTTTTGACCTTTTCTCCCTT
TGTTTTCTCTCTCACTATCCCCTTCCCAATTTCTCCTCTCTCTTTACCTA
TATCTCCTTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_m06.b1 MSMg01no175_m06.b1 CHROMAT_FILE:
MSMg01no175_m06.b1 PHD_FILE: MSMg01no175_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:55 2005
         (235 letters)



>mm_chrX_143707193_143707822
          Length = 630

 Score =  298 bits (154), Expect = 2e-85
 Identities = 211/232 (90%), Gaps = 13/232 (5%)
 Strand = Plus / Minus

                                                                       
Query: 8   agtgtgagtc-ttcttggtgctgaagggataattctgaggtttgtgtgtcagaatca-ag 65
           |||||||||| || ||||||||||||| ||||||||||||||| |||||||||| || | 
Sbjct: 430 agtgtgagtcgtt-ttggtgctgaaggaataattctgaggtttctgtgtcagaaacaca- 373

                                                                       
Query: 66  actt-ggaggacccattgacagagtgataattttgatgtatccacaaacaaactataaag 124
           | || |||||||||||||||||||||| ||| |||||||||||    |||| ||||||||
Sbjct: 372 a-ttgggaggacccattgacagagtgagaatgttgatgtatcc----acaatctataaag 318

                                                                       
Query: 125 gatgccatcctttagaggcagaaaggttcacaccatgttggggaaagtagaaatgccaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gatgccatcctttagaggcagaaaggttcacaccatgttggggaaagtagaaatgccaaa 258

                                                               
Query: 185 gactattgtatctgtacaagatcaagggtcgatgt-ggagaggagagtaggc 235
           |||| ||||||||||||||||||| ||||||| || ||||||||||| ||||
Sbjct: 257 gactcttgtatctgtacaagatca-gggtcga-gttggagaggagagaaggc 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 630
Length adjustment: 9
Effective length of query: 226
Effective length of database: 621
Effective search space:   140346
Effective search space used:   140346
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)