BAC Information

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BAC

Clone NameMSMg01-177B24
ChromosomeX (Build37)
Map Location 13,278,558 - 13,404,968
singlet/doubletdoublet
Overlap geneCask
Upstream geneCrsp2, LOC668987, LOC245350, Ppia-psx_132.1, Usp9x, LOC100043000, LOC100043002, LOC675380, Ddx3x, LOC385326, LOC634019, LOC668990, LOC100043947, LOC100043948, Nyx, LOC675416, Gpr34, Gpr82
Downstream geneLOC385327, EG385328
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177B24.T7 (MSMg01no177_b24.b1)MSMg01-177B24.TJ (MSMg01no177_b24.g1)
ACCAG371609AG371610
length717730
length of high quality
(start - end)
614 (37 - 650)562 (77 - 638)
definitionCHROMAT_FILE: MSMg01no177_b24.b1 PHD_FILE: MSMg01no177_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:38 2005CHROMAT_FILE: MSMg01no177_b24.g1 PHD_FILE: MSMg01no177_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,404,442 - 13,404,968)(13,278,558 - 13,279,119)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCT
ATTCGCAAATTTCATTTTGATTATTAATAATTCTTTAAAGAAACTAAGAC
AAATTAAAAAATATTTCTTGCATTGATGTAGGTTTTTGATGATACCCTTG
GTTTTAGCTTCTTTGCTATACTTCCTAGAACAAACTCTCATAAATCTATA
AATTTCCTCCTGCATGCACATGTTTACATGAACACACACACACACACGCA
AATGTAAGAAAATAAATAAAAAGAGGACTGAGTCCTACAGTTGTCCTCGC
ACCTCTGCATACCTGCTGTGGCATATTCATGTGTGTCTGTATGCACACGT
GATAAAACTACAATACAACTAAAGCATACAACTAAACCCAACAGTTGGGT
CTCTTCACAGCCAATTTTGGTTGGCTACTATTTCCCTTCAGCAATTTTTT
TCTCAATGAGTTAATATTTTCAATAATATGTTATAACAGTTCTTGTTATG
AGTCTCCAAAGGTGGTTGTTTTCATCTGGCTCAGTGATTTGCATGAACTA
GTTATGAAGTTATGCTTCCTCTCTGGTAGCATGGAACTGTTTGACTTTCT
TTTAGTCAGGATCTCTGGTGCCTGGACTATCTTTATTATGTAACTGATAC
TGACCTCAAATTCGAAGTAGCACTCCTGCCTCAACCTCCTGAATTATAAG
GAATGCAAGGATTGCTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTAAATTGGCAAAAAACTAAAAC
AAACAAACAATCAACAAACAAACAAACCAAAAACCAAAACCCCAAAAAAC
TCCCAAAAATCCTAAAGAAACTGAATGGAAGAGAAACTAGTAAACATGCT
TTAAAAGCATTTTATAGCACTAATGGCAAAATAAATGGCAATTAACCCAT
AACATCACTTGACATCAAAATGTGCACAAGGGAGCTGTTCATAAAGTACT
TGTCAAATTTGGACCTGAGTTTCTTTTCCCAGCATCTACTTAAAACCCAG
GCACAGTGGTGTGTGCCTACAATACTAGAACTGACTGGACAGAGATAGGC
AAATCCCTGGGGTTTATATGCCAGCTAGTCTACCCAATCAGCAGGCTCGA
GTGACATTAAAACTCCTTGTCTCAAAAATATAGTAGAGAGCACCTATGCA
AGACATTGGACATCGACCTCTGGCCTCCATTCATACTACCGTACACACGC
ACAAAGTAAATACGGATCTGCTCATCTCTCATTAATGTGGATACAAACGT
AAATATTTATGAAAAGTAATGTGAGCCTACATAGAGATCATGCTGTGTGA
AGTAAGTAATTAGCCAATCACCAGATCTGATCCCTGACTCAATATCTAGG
TATCCCCAAAAGTCTAAGTCTTATACTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_b24.b1 MSMg01no177_b24.b1 CHROMAT_FILE:
MSMg01no177_b24.b1 PHD_FILE: MSMg01no177_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:38 2005
         (614 letters)



>mm_chrX_13403955_13404968
          Length = 1014

 Score =  980 bits (507), Expect = 0.0
 Identities = 522/527 (99%)
 Strand = Plus / Minus

                                                                        
Query: 88   tgatgtaggtttttgatgatacccttggttttagcttctttgctatacttcctagaacaa 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 tgatgtaggtttttgatgatacccttggttttagcttctttgctatacttcctagaacaa 955

                                                                        
Query: 148  actctcataaatctataaatttcctcctgcatgcacatgtttacatgaacacacacacac 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 954  actctcataaatctataaatttcctcctgcatgcacatgtttacatgaacacacaaacac 895

                                                                        
Query: 208  acacgcaaatgtaagaaaataaataaaaagaggactgagtcctacagttgtcctcgcacc 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894  acacgcaaatgtaagaaaataaataaaaagaggactgagtcctacagttgtcctcgcacc 835

                                                                        
Query: 268  tctgcatacctgctgtggcatattcatgtgtgtctgtatgcacacgtgataaaactacaa 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834  tctgcatacctgctgtggcatattcatgtgtgtctgtatgcacacgtgataaaactacaa 775

                                                                        
Query: 328  tacaactaaagcatacaactaaacccaacagttgggtctcttcacagccaattttggttg 387
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 774  tacaactaaagcatacaactaaacccaacagttgggtctcttcagagccaattttggttg 715

                                                                        
Query: 388  gctactatttcccttcagcaatttttttctcaatgagttaatattttcaataatatgtta 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714  gctactatttcccttcagcaatttttttctcaatgagttaatattttcaataatatgtta 655

                                                                        
Query: 448  taacagttcttgttatgagtctccaaaggtggttgttttcatctggctcagtgatttgca 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654  taacagttcttgttatgagtctccaaaggtggttgttttcatctggctcagtgatttgca 595

                                                                        
Query: 508  tgaactagttatgaagttatgcttcctctctggtagcatggaactgtttgactttctttt 567
            || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 594  tggactagttatgaagttatgcttcctctctggtagcatggaactgtttggctttctttt 535

                                                           
Query: 568  agtcaggatctctggtgcctggactatctttattatgtaactgatac 614
            |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 534  agtcaggatctctggtgcctgggctatctttattatgtaactgatac 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no177_b24.g1 MSMg01no177_b24.g1 CHROMAT_FILE:
MSMg01no177_b24.g1 PHD_FILE: MSMg01no177_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:38 2005
         (562 letters)



>mm_chrX_13278358_13279319
          Length = 962

 Score = 1033 bits (534), Expect = 0.0
 Identities = 555/562 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaaattggcaaaaaactaaaacaaacaaacaatcaacaaacaaacaaaccaaaaacca 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 201 tttaaattggcaaaaaactaaaacaaacaaacaaacaacaaacaaacaaacaaaaaacca 260

                                                                       
Query: 61  aaaccccaaaaaactcccaaaaatcctaaagaaactgaatggaagagaaactagtaaaca 120
           |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacccaaaaaaactcccaaaaaccctaaagaaactgaatggaagagaaactagtaaaca 320

                                                                       
Query: 121 tgctttaaaagcattttatagcactaatggcaaaataaatggcaattaacccataacatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctttaaaagcattttatagcactaatggcaaaataaatggcaattaacccataacatc 380

                                                                       
Query: 181 acttgacatcaaaatgtgcacaagggagctgttcataaagtacttgtcaaatttggacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttgacatcaaaatgtgcacaagggagctgttcataaagtacttgtcaaatttggacct 440

                                                                       
Query: 241 gagtttcttttcccagcatctacttaaaacccaggcacagtggtgtgtgcctacaatact 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 gagtttcttttcccagcatctacttaaaacccaggcacagtggtatgtgcctacaatact 500

                                                                       
Query: 301 agaactgactggacagagataggcaaatccctggggtttatatgccagctagtctaccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaactgactggacagagataggcaaatccctggggtttatatgccagctagtctaccca 560

                                                                       
Query: 361 atcagcaggctcgagtgacattaaaactccttgtctcaaaaatatagtagagagcaccta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcagcaggctcgagtgacattaaaactccttgtctcaaaaatatagtagagagcaccta 620

                                                                       
Query: 421 tgcaagacattggacatcgacctctggcctccattcatactaccgtacacacgcacaaag 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 tgcaagacattggacatcgacctctggcctccattcatactaccgtacacacgcacaagg 680

                                                                       
Query: 481 taaatacggatctgctcatctctcattaatgtggatacaaacgtaaatatttatgaaaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 taaatacggatctgctcatctctcattaatgtggatacaaacgtaaatatttatggaaag 740

                                 
Query: 541 taatgtgagcctacatagagat 562
           ||||||||||||||||||||||
Sbjct: 741 taatgtgagcctacatagagat 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)