Query= MSMg01no177_g15.b1 MSMg01no177_g15.b1 CHROMAT_FILE:
MSMg01no177_g15.b1 PHD_FILE: MSMg01no177_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:59 2005
(595 letters)
>mm_chrX_37919698_37920693
Length = 996
Score = 1065 bits (551), Expect = 0.0
Identities = 579/589 (98%), Gaps = 3/589 (0%)
Strand = Plus / Plus
Query: 9 gaattcttctaccgtcccttccaagtaaaacatgtacttcttatttatcatacaaatgag 68
||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 209 gaattcttcaactgtcccttccaagtaaaacatgaacttcttatttatcatacaaatgag 268
Query: 69 aaaacagaattttggcaatgccagaggcattcacatgatgtttcaaatttctcagattat 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aaaacagaattttggcaatgccagaggcattcacatgatgtttcaaatttctcagattat 328
Query: 129 gtaatagagtacataaaattaatattgtcttcatcaaactcacttaaaatatttgcatct 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtaatagagtacataaaattaatattgtcttcatcaaactcacttaaaatatttgcatct 388
Query: 189 aggaactctggcttgtagtaattgtaaactttgtattttgaactcaggtttatacaagag 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aggaactctggcttgtagtaattgtaaactttgtattttgaactcaggtttatacaagag 448
Query: 249 cactatgcactacatgtggaaatagaagtataatgttaactgatacattgtaatggttgg 308
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 449 cactatgcactacatatggaaatagaagtataatgttaactgatacat-gtaatggttgg 507
Query: 309 tatgagatgttagagctctatgtacatgttatcaattatccattggacaatcttaatcca 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tatgagatgttagagctctatgtacatgttatcaattatccattggacaatcttaatcca 567
Query: 369 gcaaccctaccatttcattgagatcccactttcaccttttttttt--agtttagaaccca 426
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 568 gcaaccctaccatttcattgagatcccactttcacctttttttttttagtttagacccca 627
Query: 427 aaatacatttatttctataataatagaaacagcaacatcaccaacttattctgcagcttg 486
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 628 aaatacatttatttctataataatagaaacagcaacagcaccaacttattctgcagctta 687
Query: 487 agtgtattgttcaggaaaggtgatagaagacatgaatttccctttgtcattattagttcc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 agtgtattgttcaggaaaggtgatagaagacatgaatttccctttgtcattattagttcc 747
Query: 547 atttattgtcctggattgtattttgtttcctgacttccttatgacacat 595
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 atttattgtcctggattgtattttgtttcctgacttccttatgacacat 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 996
Length adjustment: 10
Effective length of query: 585
Effective length of database: 986
Effective search space: 576810
Effective search space used: 576810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no177_g15.g1 MSMg01no177_g15.g1 CHROMAT_FILE:
MSMg01no177_g15.g1 PHD_FILE: MSMg01no177_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:59 2005
(611 letters)
>mm_chrX_38051099_38052109
Length = 1011
Score = 1174 bits (607), Expect = 0.0
Identities = 610/611 (99%)
Strand = Plus / Minus
Query: 1 aaataaacatgagtagccttttacacagactttgcaattatttaaataatacaaaatatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 aaataaacatgagtagccttttacacagactttgcaattatttaaataatacaaaatatc 752
Query: 61 acatttgcattattaatatatgaatgaaaaatacttgatagtaaatatgcatacatatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 acatttgcattattaatatatgaatgaaaaatacttgatagtaaatatgcatacatatgt 692
Query: 121 actgaatgcacataggacaaggtgatatccaggaagaactaggctatgagtctcagtgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 actgaatgcacataggacaaggtgatatccaggaagaactaggctatgagtctcagtgca 632
Query: 181 ctaacatcctttaagttaatttacatgtaggatatctaaaataaaatagcttaaatatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ctaacatcctttaagttaatttacatgtaggatatctaaaataaaatagcttaaatatgg 572
Query: 241 caaagtttttctttcccatataaatcaagtgctgaagtgtgacttaaggactaaatagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 caaagtttttctttcccatataaatcaagtgctgaagtgtgacttaaggactaaatagca 512
Query: 301 acaacatgattatcagagagaaaggatttcctcagatgcaggcagcttggttcctgtaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 acaacatgattatcagagagaaaggatttcctcagatgcaggcagcttggttcctgtaat 452
Query: 361 attccttcagttttagggtataacctagtctctggggttctagtaatcatctccacattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 attccttcagttttagggtataacctagtctctggggttctagtaatcatctccacattt 392
Query: 421 taaagaatagaatgatagaaagacattcatgtacctctttcttaataagagaattctgaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 taaagaatagaatgatagaaagacattcatgtacctctttcttaataagagaattctgaa 332
Query: 481 agtcttaaggcacttctacttactcttcactgttggaaaacatcatagtctaccgtctaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 agtcttaaggcacttctacttactcttcactgttggaaaacatcatagtctaccgtctaa 272
Query: 541 tggcaggaatgtagaaaaatgaacttttaatatgaactcaagattccattaatttcagta 600
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tggcaggaatgtagaaaaatggacttttaatatgaactcaagattccattaatttcagta 212
Query: 601 aaatagggcaa 611
|||||||||||
Sbjct: 211 aaatagggcaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
