Query= MSMg01no177_j21.b1 MSMg01no177_j21.b1 CHROMAT_FILE:
MSMg01no177_j21.b1 PHD_FILE: MSMg01no177_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:13 2005
(369 letters)
>mm_chrX_120789365_120790133
Length = 769
Score = 491 bits (254), Expect = e-143
Identities = 328/358 (91%), Gaps = 10/358 (2%)
Strand = Plus / Minus
Query: 22 ttcaacaaacagatccatctgcttcagatccttcaggatctatgcattcttccaaaggac 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ttcaacaaacagatccatctgcttcagatccttcaggatctatgcattcttccaaaggac 693
Query: 82 ccatggtaatttctttatctggacggggaacactaggatctgtaccatctgccctagagc 141
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 692 ccatggtaatttctttatctggacgaggaacactaggatctgtatcatctgccctagagc 633
Query: 142 ctttg-caatgtacctatctgctcaagtgaatctaggagctttgttatct---------g 191
|||| |||||| |||||||||||||||||||| |||| ||||||||||| |
Sbjct: 632 atttgacaatgtccctatctgctcaagtgaatccaggacctttgttatctgttcaagaag 573
Query: 192 ctggaggcccttgcctgtctttacaggggaatctggaagggtgtacctgtacacatggaa 251
|| ||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||| |
Sbjct: 572 ctagaggctcttgcctgtctttacagggaaatctggaaggttgtacctgtactcatgtca 513
Query: 252 agccaggaatgtccaatgcttcaccaggagctttggaaatttcagcctctaccatagtga 311
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 512 agccaggaatatccaatgcttccccaggagctttggaaatttcagcatctaccatagtga 453
Query: 312 gtctaggaccttcaccatctctccaattggatttgaaagtgtcacattctgtcttaat 369
|||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 452 ctctaggaccttctccatctgtccaattggatttgaaagtgtcacattctgtcctaat 395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space: 273600
Effective search space used: 273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no177_j21.g1 MSMg01no177_j21.g1 CHROMAT_FILE:
MSMg01no177_j21.g1 PHD_FILE: MSMg01no177_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:13 2005
(296 letters)
>mm_chrY_2793725_2794420
Length = 696
Score = 404 bits (209), Expect = e-117
Identities = 272/293 (92%), Gaps = 2/293 (0%)
Strand = Plus / Minus
Query: 5 aaaacaaactgaaaactagtcttcattttcctttatctggttttgaaagaccagatttcc 64
||||||||||||| || |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 496 aaaacaaactgaagaccagtcttcattttcctttacctggttttgaaaggccagatttcc 437
Query: 65 aaaatttgtatatataggcgccaaagtgcttccaaatccagaggctcctctcaacctcag 124
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 436 aaaatttgcatatataggcgccaaagtgcttctaaatccagaggctcctctcaacctcag 377
Query: 125 aagaactggtacttcagacataattcagggaaggctgtgattatgtatgtgttgttttgg 184
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 376 aagagctggtacttcagacataattcagggaaggctgtgtttatgtatgtgttgttttgg 317
Query: 185 tataggaaggtaagctctaactctatatttcagaactatctcaaagcacatgaacagtgt 244
||||||||||||||| |||||||||||| |||| | |||||||||| ||||| ||||| |
Sbjct: 316 tataggaaggtaagcactaactctatatctcagtattatctcaaagtacatgtacagttt 257
Query: 245 agactgtccttgaaaatgatgtacctaa-ccttacaaatttactggggcctaa 296
||||| |||||||||||| |||| | | ||||||||||||||||||||||||
Sbjct: 256 ggactggccttgaaaatgaagtac-tcagccttacaaatttactggggcctaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space: 197169
Effective search space used: 197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
